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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttttgtcatggttgaactgttttttattttgcttacttttattccaggcgaatatatatcttgagttttcaaattctaacatcagtttaatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTGCCGAGCGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCTGAGGAAGG

Basic information

species Glycine max
transcript GLYMA05G34630.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34630.2 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G037185_T01 (Zea mays), 3'ss of exon 4
------------------------gttagttttgtcatg------gttgaactgttttttattttgcttactt--ttattccaggcgaatatatatcttgagttttcaaattctaaca--------tcagtttaatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTGCCGAGCGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCTGAGGAAGG
                         | |  |||| ||||      | | |    | |   || ||| ||       | |||||  |  || |      | |||| || | |   || |        |  | ||  | ||||||||||||||||||||| ||||| ||| | |||||| |||  ||||  || || || |||  ||| |||||||| ||||||||||||||||| || |||||
gtaagttaggcacattcgttacttctcatctttgacatgcacaatgataattcatctaacatgttgtttggcaaaattttccacacttatttcctcaataagttctctattatgaaaaaataattttttggtttctctgcagCATCTCTGCATATTGAATACCCTATGCTATTTGAAGTCCACAATGCAGCAGCAGAACGGACTTCGCATTGTGGTGTTCTGGAGTTCATTGCAGAAGAAGG

upper sequence: GLYMA05G34630.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv03s0038g00750.t01 (Vitis vinifera), 3'ss of exon 5
gttagttttgtcatggttgaactgttttttattttgcttacttt-tattccaggcgaatatatatcttgagt------tttcaaattctaacat-cagtttaatt-tgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTGCCGAGCGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCTGAGGAAGG
||||||| | | |  |||| |   | | ||||     ||  | | |  |  | ||   |     |||| | |      | |   ||  |||||   |  |||||  |||||| ||||| ||||||||||| || |||||||| |||||  |||||  ||||||  ||||||| || |||||||| |||||||| ||||| ||||| || ||
gttagttctttta--gttggaacctatgttatggcatttgttatatggttgatgcacttcagattcttaattaacctatctacgatgataacaaataacttaatcctgcagCTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTGCTCAGCGGGTCTCCCATTGTGGAGTTCTGGAATTCATAGCTGAAGAGGG

upper sequence: GLYMA05G34630.2 (Glycine max), 3'ss of exon 5
lower sequence: PP1S245_32V6.2 (Physcomitrella patens), 3'ss of exon 4
gttagttttgtcatggttgaactgttttttattttgcttacttttattccaggcgaatatatatcttgagttttcaaattctaacatcagtttaatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTGCCGAGCGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCTGAGGAAGG
  ||| | ||      |   | ||   |    | || | | | | ||||       || ||  | |  |      || ||| ||  |    ||  |||||||| |||||||  |||||||||||||||||||||||| |||  ||   | |  ||  ||||     ||||||||| || ||||||||  | || ||||||||
agtagatatgctgcattgatattggaatacggtgtgat-attctgattcgtaattgat-tagctgtaaaagaagtaatttcgaatgttgtgtttctttgcagCGTCTCTGCGCATTGATTACCCAATGTTGTTTGAAGTCCACAACCCTTCAACCTTGCGGACAAGTCATTGTGGCGTGCTGGAGTTTGTGGCAGAGGAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322766|gb|FK014457.1|FK014457
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccaggcgaatatatatcttgagttttcaaattctaacatcagtttaatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTGCCGAGCGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCTGAGGAAGG
        aatatatatcttga  TA-rich tract