1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggtataattgggaaccagtagatttcctatgttgaccatgtatcagctctattggctctaatcaaattgtgtatccttttaactttgtcacccattccagTTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGATGTACGGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCAC
species | Glycine max |
transcript | GLYMA05G33140.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGAGGTGTTGGTTCTAG TTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGAEST: gi|207753957|gb|GD723779.1|GD723779
genomic: CGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGAGGTGTTGGTTCTAGgtaaataatc ... cccattccagTTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGA
EST: CGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGAGGTGTTGGTTCTAG TTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGAEST: gi|193395711|gb|FK362250.1|FK362250
genomic: CGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGAGGTGTTGGTTCTAGgtaaataatc ... cccattccagTTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGA
EST: GTTATTTGGAACTGGAGGTGTTGGTTCTAG TTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGAEST: gi|151395988|gb|EV265865.1|EV265865
genomic: GTTA-TTGGAACTGGAGGTGTTGGTTCTAGgtaaataatc ... cccattccagTTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGA
EST: CGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGAG-TGTTGGTTCTAG T-GTTTACAGATAGCTAGAGCCTTTGGTGC
genomic: CGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGAGGTGTTGGTTCTAGgtaaataatc ... cccattccagTTGTTTACAGATAGCTAGAGCCTTTGGTGC
gctctattggctctaatcaaattgtgtatccttttaactttgtcacccattccagTTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGATGTACGGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCAC
ttttaac putative branch site (score: 2)
cccattcc putative PPT
taatcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtataattgggaaccagtagatttcctatgttgaccatgtatcagctctattggctctaatcaaattgtgtatccttttaactttgtcacccattccagTTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGATGTACGGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG