1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcgaaatcaatttctctgtttttgctaaatttgttttcacttcagtatacaaggtgaacttttccagcgcctacataactttattccgtcatttattcagTTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATGAAGACCCAAAGCGTAATCCACAAGCACGTCTTCACGAGACACTAACCTA
species | Glycine max |
transcript | GLYMA05G32340.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAA TGAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATGEST: gi|9902835|gb|BE611803.1|BE611803
genomic: TCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAAgtaagttaca ... atttattcagTTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATG
EST: TAATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAA TTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATGEST: gi|209717497|gb|BW679658.1|BW679658
genomic: TAATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAAgtaagttaca ... atttattcagTTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATG
EST: TAATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAA TTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATG
genomic: TAATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAAgtaagttaca ... atttattcagTTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATG
tatacaaggtgaacttttccagcgcctacataactttattccgtcatttattcagTTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATGAAGACCCAAAGCGTAATCCACAAGCACGTCTTCACGAGACACTAACCTA
acataac putative branch site (score: 3)
tttattc putative PPT
tacataactttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgaaatcaatttctctgtttttgctaaatttgttttcacttcagtatacaaggtgaacttttccagcgcctacataactttattccgtcatttattcagTTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATGAAGACCCAAAGCGTAATCCACAAGCACGTCTTCACGAGACACTAACCTA
- - - - - - - - - - - - - - - - - - -cacttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcctac