1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatcctaattctttgaagatttttcttcttcttttcttttattggtctaattttgaggtccaacccatatctactctttttgacgagcccaaatcatgtctttctttgttttctcatgctttttattattgatgaaatttgttgttgttcctaaactccattatgccatagATATGTTGATGATACCTTGAGAATAGGAAGGGACGACAAAAGCAATATCTTTGTGCTGGAAAGATTTGATGATAGTAATAACACGTAGCCAATTTCCTTC
species | Glycine max |
transcript | GLYMA05G32170.1 |
intron # | 5 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: CTTCAATCCAGAGGGATGGCTGGAAATCAC ATATGTTGATGATACCTTGAGAATAGGAAGGGACGACAAAAGCAATATCTTEST: gi|22928718|gb|BU545857.1|BU545857
genomic: CTTCAATCCAGAGGGATGGCTGGAAATCACgtatcctaat ... tatgccatagATATGTTGATGATACCTTGAGAATAGGAAGGGACGACAAAAGCAATATCTT
EST: TATGATCTTTTGTTGGGCATCTTCAATCCAGAGGGATGGCTGAAAATCAC ATATGTTGATGATACCTTGAGAATAGGAAGGGACGACAAAAGCAATATCTTEST: gi|13478869|gb|BG508212.1|BG508212
genomic: TATGATCTTTTGTTGGGCATCTTCAATCCAGAGGGATGGCTGGAAATCACgtatcctaat ... tatgccatagATATGTTGATGATACCTTGAGAATAGGAAGGGACGACAAAAGCAATATCTT
EST: CAATCCAGAGGGATGGCTGGAAATCAC ATATGTTGATGATACCTTGAGAATAGGAAGGGACGACAAAAGCAATATCTT
genomic: CAATCCAGAGGGATGGCTGGAAATCACgtatcctaat ... tatgccatagATATGTTGATGATACCTTGAGAATAGGAAGGGACGACAAAAGCAATATCTT
tgctttttattattgatgaaatttgttgttgttcctaaactccattatgccatagATATGTTGATGATACCTTGAGAATAGGAAGGGACGACAAAAGCAATATCTTTGTGCTGGAAAGATTTGATGATAGTAATAACACGTAGCCAATTTCCTTC
ttcctaaac putative branch site
ctccatt putative PPT
tttattattgatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcctaattctttgaagatttttcttcttcttttcttttattggtctaattttgaggtccaacccatatctactctttttgacgagcccaaatcatgtctttctttgttttctcatgctttttattattgatgaaatttgttgttgttcctaaactccattatgccatagATATGTTGATGATACCTTGAGAATAGGAAGGGACGACAAAAGCAATATCTTTGTGCTGGAAAGATTTGATGATAGTAATAACACGTAGCCAATTTCCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA