1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgggatatttttgtgttactgtgatgacagcaatagcaggccatttatttcttgtgtttcaatttagttgctgatttcagaatcttccatgtctaattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAAGAAAGATTAGCCCAAGAGTATTTGATGCCGATTTATCTAAGGAAAAGA
species | Glycine max |
transcript | GLYMA05G32030.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|5342415|gb|AI794699.1|AI794699
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|120496298|gb|EH224465.1|EH224465
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|19271260|gb|BM887516.1|BM887516
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAEST: gi|18039945|gb|BM308239.1|BM308239
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|24206051|gb|BU965304.1|BU965304
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|37994245|gb|CF805991.1|CF805991
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: GCCATGGCCTAGACTGAGAAAATTGCACTCATTCTCGAACAA GTCCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|26047818|gb|CA784480.1|CA784480
genomic: GCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|37997022|gb|CF808611.1|CF808611
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGEST: gi|17519815|gb|BM188857.1|BM188857
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTG
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|7925406|gb|AW831371.1|AW831371
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|308098502|gb|HO760243.1|HO760243
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|17400997|gb|BM177779.1|BM177779
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: TTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCATAACAA GTCCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCEST: gi|151401327|gb|EV271141.1|EV271141
genomic: TTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTC-GAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTC
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|22541281|gb|BU091124.1|BU091124
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTCTGGTGTCTAGACCG-CAGGATTATGTTCGTGCACAAATACTCTEST: gi|23731285|gb|BU763760.1|BU763760
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTT-T-GTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCT
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGGTCGTGGACAAATACTCTCAEST: gi|7795120|gb|AW780517.1|AW780517
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|192295223|gb|FG986942.1|FG986942
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|17022950|gb|BM093984.1|BM093984
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|192309222|gb|FG999449.1|FG999449
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|12691513|gb|BG157849.1|BG157849
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAEST: gi|192299616|gb|FG989998.1|FG989998
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
tcttgtgtttcaatttagttgctgatttcagaatcttccatgtctaattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAAGAAAGATTAGCCCAAGAGTATTTGATGCCGATTTATCTAAGGAAAAGA
gtctaat putative branch site (score: 3)
tttcaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgggatatttttgtgttactgtgatgacagcaatagcaggccatttatttcttgtgtttcaatttagttgctgatttcagaatcttccatgtctaattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCAAGAAAGATTAGCCCAAGAGTATTTGATGCCGATTTATCTAAGGAAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA