1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...caacttgtgccagatcattccaattctagtttctgctgttttatttgggtgtcatgacctagatttcttttagatgatattttacttctattttgcacagTATGTGCATTTTCTTCAGAGGAAGTACTCTCTTGGATCGTTTAACTTGTTGGGCCACACTGCACCAGTACAGGCAGCAAGTTTACTACTAGTAGGTCCCT
species | Glycine max |
transcript | GLYMA05G31940.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTTTATAGCTGCTGCAGTGGCAGTTTGGAGCACCTCACTACAGCAGTAT TATGTGCATTTTCTTCAGAGGAAGTACTCTCTTGGATCGTTTAACTTGTTGEST: gi|193588023|gb|FK543086.1|FK543086
genomic: GTTTTATAGCTGCTGCAGTGGCAGTTTGGAGCACCTCACTACAGCAGTATgtaagtaaca ... ttttgcacagTATGTGCATTTTCTTCAGAGGAAGTACTCTCTTGGATCGTTTAACTTGTTG
EST: GTTTTATAGCCGCTGCAGTGGCAGTTTGGAGCACCTCACTACAGCAGTAT TATGTGCATTTTCTTCAGAGGAAGTACTCTCTTGGATCGTTTAACTTGTTGEST: gi|193341670|gb|FK305944.1|FK305944
genomic: GTTTTATAGCTGCTGCAGTGGCAGTTTGGAGCACCTCACTACAGCAGTATgtaagtaaca ... ttttgcacagTATGTGCATTTTCTTCAGAGGAAGTACTCTCTTGGATCGTTTAACTTGTTG
EST: TTTATAGCTGTCTTGCAGTGGCAGTTTGGAGCACCTCACTACAGCAGTAT TATGTGCATTTTCTTCAGAGGAAGTACTCTCTTGGATCGTTTAACTTGTTG
genomic: TTTATAGCTG-C-TGCAGTGGCAGTTTGGAGCACCTCACTACAGCAGTATgtaagtaaca ... ttttgcacagTATGTGCATTTTCTTCAGAGGAAGTACTCTCTTGGATCGTTTAACTTGTTG
tgggtgtcatgacctagatttcttttagatgatattttacttctattttgcacagTATGTGCATTTTCTTCAGAGGAAGTACTCTCTTGGATCGTTTAACTTGTTGGGCCACACTGCACCAGTACAGGCAGCAAGTTTACTACTAGTAGGTCCCT
ttttacttctatttt CT-rich tract
ttttagatgatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacttgtgccagatcattccaattctagtttctgctgttttatttgggtgtcatgacctagatttcttttagatgatattttacttctattttgcacagTATGTGCATTTTCTTCAGAGGAAGTACTCTCTTGGATCGTTTAACTTGTTGGGCCACACTGCACCAGTACAGGCAGCAAGTTTACTACTAGTAGGTCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG