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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattttcacaagttttcatttcatgcttatcaggatatgaattcatgaatcacatctaggttctttccatcacacccttttgttgcttttaaatatgcagGGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGGTATTTCCTGAACACCTGAGTGCTTTTACTCACTTG

Basic information

species Glycine max
transcript GLYMA05G31870.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31870.1 (Glycine max), 3'ss of exon 5
lower sequence: AT4G39460.2 (Arabidopsis thaliana), 3'ss of exon 5
--------------------gattttcacaagttttcatttcatgcttatcaggatatgaattcatgaatcacatctaggttctttccatcacaccctttt---------gttgcttttaaa-------tatgcagGGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGGTATTTCCTGAACACCTGAGTGCTTTTACTCACTTG
                       | |||    |  | ||||   | | || ||  | | ||| |   | | |  ||   || | ||  ||  | ||  |||          ||  ||| | |       | |  ||||| || |||||||||||||||||||| ||||| | |||||||||| |||||| |   |||||||| ||  | || ||  || ||||| ||
gtaagtgactctgatctcacagatctcatccctagttattttg-gttgattagagtctcaatcc-caagttatttccttgtcccttgtatttctcctatttttatacttgattattttgacaatctttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120528780|gb|EH256914.1|EH256914
EST:     TTGAAGGGCCTTTATTCCGGATTGGCAGGGAACCTTGTTGGTGTCTTACC                         GGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCT
genomic: TTGAAGGGCCTTTATTCCGGATTGGCAGGGAACCTTGTTGGTGTCTTACCgtgagaacct ... aaatatgcagGGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaatcacatctaggttctttccatcacacccttttgttgcttttaaatatgcagGGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGGTATTTCCTGAACACCTGAGTGCTTTTACTCACTTG
                                     ttgcttttaaatat  TA-rich tract