1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttctgccatatttcattgtggaaattattttgttctaactttttaaccttcatatcttctgctgctatttcatcatatctcgtgttaatttgtatcagGGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATTGCAAGTGTGATGGCCCAAAAGATTCAATTTAATACCTTTGGTGGGAACC
species | Glycine max |
transcript | GLYMA05G31630.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGGATTTGAGACACAGGGTGTCATTCCTGATATAGTTACCATGGCAAAG GGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCTTAAATTEST: gi|254331191|gb|GR843310.1|GR843310
genomic: GGGGATTTGAGACACAGGGTGTCATTCCTGATATAGTTACCATGGCAAAGgtctgtacca ... tttgtatcagGGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATT
EST: GGGGATTTGAGACACAGGGTGTCATTCCTGATATAGTTACCATGGCAAAG GGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATTEST: gi|10843282|gb|BF066590.1|BF066590
genomic: GGGGATTTGAGACACAGGGTGTCATTCCTGATATAGTTACCATGGCAAAGgtctgtacca ... tttgtatcagGGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATT
EST: GGGGATATGAGACACAGGGTGTCATTCATGATATAGTTACCATGGCAAAT GGTATTGGCAATGGTCTTGCC-TTGGGGAGCTEST: gi|254330912|gb|GR842177.1|GR842177
genomic: GGGGATTTGAGACACAGGGTGTCATTCCTGATATAGTTACCATGGCAAAGgtctgtacca ... tttgtatcagGGTATTGGCAATGGTCT-GCCATTGGG-AGCT
EST: GGGGATTTGAGACACAGGGTGTCATTCCTGATATAGTTACCATGGCAAAG GGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATTEST: gi|254331192|gb|GR843311.1|GR843311
genomic: GGGGATTTGAGACACAGGGTGTCATTCCTGATATAGTTACCATGGCAAAGgtctgtacca ... tttgtatcagGGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATT
EST: TCCTGATATAG-TACCATGGCAAAG GGTATTGGCAATGGTCTGCCATT-GGAGCTGTAGTTACAACTCCAGAAATTEST: gi|193500668|gb|FK464465.1|FK464465
genomic: TCCTGATATAGTTACCATGGCAAAGgtctgtacca ... tttgtatcagGGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATT
EST: GGGGATTTGAGACACAGGGTGTCATTCCTGATATAGTTACCATGGCAAAG GGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATT
genomic: GGGGATTTGAGACACAGGGTGTCATTCCTGATATAGTTACCATGGCAAAGgtctgtacca ... tttgtatcagGGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATT
taaccttcatatcttctgctgctatttcatcatatctcgtgttaatttgtatcagGGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATTGCAAGTGTGATGGCCCAAAAGATTCAATTTAATACCTTTGGTGGGAACC
ttaatttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctgccatatttcattgtggaaattattttgttctaactttttaaccttcatatcttctgctgctatttcatcatatctcgtgttaatttgtatcagGGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATTGCAAGTGTGATGGCCCAAAAGATTCAATTTAATACCTTTGGTGGGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - ctgccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgcta