1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...caatgcattctcttttgactgttaagtagctatctattgcaagttcctgtgttctcccctccaaatagtgattactgatttactgtgattctgttgacagTCCTGCTGGAAATCAATGTGTCTCAAGAGAAGATTACTCTTTAATCCAGAAGAAAGGATTGGCTGTTGTGGATTGTTCATGGGCACGCTTAGATGATGTG
species | Glycine max |
transcript | GLYMA05G31550.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGTTACGTGTGAGTAATGGTTTTGGGGGCGTCGTTTTAAG TCCTGCTGGAAATCAATGTGTCTCAAGAGAAGATTACTCTTTAATCCAGAAEST: gi|193603153|gb|FK557120.1|FK557120
genomic: GAGTTACGTGTGAGTAATGGTTTTGGGGGCGTCGTTTTAAGgtattttgtt ... ctgttgacagTCCTGCTGGAAATCAATGTGTCTCAAGAGAAGATTACTCTTTAATCCAGAA
EST: GAGTTACGTGTGAGTAATGGTTTT-GGGGCGTCGTTTTAAG TCCTGCTGGAAATCAATGTGTCTCAAGAGAAGATTACTCTTTAATCCAGAAEST: gi|208179337|gb|GD974040.1|GD974040
genomic: GAGTTACGTGTGAGTAATGGTTTTGGGGGCGTCGTTTTAAGgtattttgtt ... ctgttgacagTCCTGCTGGAAATCAATGTGTCTCAAGAGAAGATTACTCTTTAATCCAGAA
EST: TGCTAAAAGAGTTACGTGTGAGTAATGGTTTTGGGGGCGTCGTTTTAAG TCCTGCTGGAAATCAATGTGTCTCAAGAGAAGATTACTCTTTAATCCAGAA
genomic: TGCTAAAAGAGTTACGTGTGAGTAATGGTTTTGGGGGCGTCGTTTTAAGgtattttgtt ... ctgttgacagTCCTGCTGGAAATCAATGTGTCTCAAGAGAAGATTACTCTTTAATCCAGAA
cctgtgttctcccctccaaatagtgattactgatttactgtgattctgttgacagTCCTGCTGGAAATCAATGTGTCTCAAGAGAAGATTACTCTTTAATCCAGAAGAAAGGATTGGCTGTTGTGGATTGTTCATGGGCACGCTTAGATGATGTG
tactgat putative branch site (score: 2)
ttctgtt putative PPT
aaatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgcattctcttttgactgttaagtagctatctattgcaagttcctgtgttctcccctccaaatagtgattactgatttactgtgattctgttgacagTCCTGCTGGAAATCAATGTGTCTCAAGAGAAGATTACTCTTTAATCCAGAAGAAAGGATTGGCTGTTGTGGATTGTTCATGGGCACGCTTAGATGATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - gcattct
- - - - - - - ttgactg
- - - - - - - - - - - - - - - - - tattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgtg