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gttcattattgattattattattatgtgggttattaaattttatttatgcaaaataaataaattggtgaattttgctttgtgttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTTTAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTGGATTTCCTTGT
species | Glycine max |
transcript | GLYMA05G31450.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|193717547|gb|FK652889.1|FK652889
genomic: TTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|22525230|gb|BU084041.1|BU084041
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|7028502|gb|AW458285.1|AW458285
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|15285656|gb|BI469547.1|BI469547
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|27424631|gb|CA936151.1|CA936151
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: CTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|207810457|gb|GD781147.1|GD781147
genomic: CTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACC-TTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|193598415|gb|FK553671.1|FK553671
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|208333231|gb|GE128236.1|GE128236
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: AAAATTGTTCCTTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|7639970|gb|AW734281.1|AW734281
genomic: AAAAT-GTTCCTTT-CATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGEST: gi|20449596|gb|BQ253720.1|BQ253720
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGG
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|193391842|gb|FK354655.1|FK354655
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGEST: gi|9259990|gb|BE348137.1|BE348137
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAG
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|193559455|gb|FK515388.1|FK515388
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|208055212|gb|GD853173.1|GD853173
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|193619363|gb|FK571791.1|FK571791
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGEST: gi|193533164|gb|FK491052.1|FK491052
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTG
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACNGTTTGATTGGAGGAGATGACTEST: gi|208180147|gb|GD978882.1|GD978882
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|208137406|gb|GD938854.1|GD938854
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCEST: gi|208289438|gb|GE085829.1|GE085829
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCC
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|192301388|gb|FG994712.1|FG994712
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|208274895|gb|GE066385.1|GE066385
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GAAAATGTTCCTTTCATCTAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGEST: gi|208071543|gb|GD872262.1|GD872262
genomic: GAAAATGTTCCTTTCATC-AATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTG
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|193614156|gb|FK565894.1|FK565894
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|193564976|gb|FK520133.1|FK520133
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|15287101|gb|BI470992.1|BI470992
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: CAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|9986213|gb|BE660321.1|BE660321
genomic: CAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|15203303|gb|BI426071.1|BI426071
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|120529530|gb|EH257664.1|EH257664
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|8670153|gb|BE191260.1|BE191260
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|10231165|gb|BE800112.1|BE800112
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|13312611|gb|BG406262.1|BG406262
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|27425475|gb|CA936995.1|CA936995
genomic: GGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|9204872|gb|BE331096.1|BE331096
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|208096888|gb|GD896725.1|GD896725
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GAAAATGTTCCTTTCATTCAATGGAAGCCCTCAAAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|14259658|gb|BG882566.1|BG882566
genomic: GAAAATGTTCCTTTCA-TCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCEST: gi|20498701|gb|BQ273631.1|BQ273631
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCC
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTEST: gi|6913694|gb|AW395224.1|AW395224
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
attttatttatgcaaaataaataaattggtgaattttgctttgtgttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTTTAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTGGATTTCCTTGT
ttttcgtc CT-rich tract
aaaataaataaattgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcattattgattattattattatgtgggttattaaattttatttatgcaaaataaataaattggtgaattttgctttgtgttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACTTTAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTGGATTTCCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA