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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtctattctctgtcaaatttatgttcagattgttctaggaaatgttacaaacatgttatattttctcttcattttatgggttagttttaattaaatgttatataaaaaacaatcatctctgttgtagctgcacttacatgtgctttatttgaatcatcagGTTCAAATAATCTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAG

Basic information

species Glycine max
transcript GLYMA05G30980.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30980.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv07s0191g00140.t01 (Vitis vinifera), 3'ss of exon 5
------------gtt-agtctattctctgtcaaatttatgttcagattgttctaggaaatgttacaaacatgttatattttctcttcattttatgggttagttttaattaaatgttatataaaaaacaatcatctc--tgttgtagctgcacttacatgtgctttatttgaatcatcagGTTCAAATAAT---CTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAG
            ||| | | ||| |  ||   | ||| |  |  ||  | | |  | | |    | || |   ||  | ||||  |   ||  ||     ||| ||  | |     || |||  |       | |     || ||    |  || | | | || | ||    |  |||||||||||||||   || |||||||||||| | || || || || || | ||| |||||| |||||||||| ||||| ||||||||||||||||||
gtaggtgcctatgttgaatttatgcgatgaatagtttttactgggaggggtttgtgcatttaatctaaaagaataattgttcttctaggttgttgtccatgttatagatgataaaaatttaaggagttcctgttttatcattctactcactgtttcctttactct-ttccctttttcagGTTCAAATAATAACCTTTACCCTGGTGATATAATTCCTTTTACCAGAAGACCACTTTTCTTGATTATTGATAGTGACAACAGCCATGCATTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254335755|gb|GR847283.1|GR847283
EST:     ACTGAGCTATTATGACAATTATCTGTGGTTTGGTCCCAAGGGAAATAGTG                         GTTCAAATAATCTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTC
genomic: ACTGAGCTATTATGACAATTATCTGTGGTTTGGTCCCAAGGGAAATAGTGgttagtctat ... gaatcatcagGTTCAAATAATCTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaacaatcatctctgttgtagctgcacttacatgtgctttatttgaatcatcagGTTCAAATAATCTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAG
                         cacttac  putative branch site (score: 2)
                                      tttatttgaatcat  TA-rich tract