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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgaattgttttacttatatctactgataaaacttgggtagttatagtattctttcagttttgatatttttaacatttatgctttatctagtctaggatcagttgaaagttgttcaatgcatttcagctgttattccattttctttctgcagATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGATGGTTTGTTTAAA

Basic information

species Glycine max
transcript GLYMA05G30530.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30530.1 (Glycine max), 3'ss of exon 5
lower sequence: AT4G05420.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatttgaattgttttacttatatctactgataaaacttgggtagttatagtattctttcagttttgatatttttaacatttatgctttatctagtctaggatcagttgaaagttgttcaatgcatttcagctgttattccattttctttctgcagATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGATGGTTTGTTTAAA
|||||  |     | |  |  | |  ||||   |     | ||  ||||| ||||   |    ||        | || |  ||||| || ||   |  ||| |  | ||           ||| |  | | || | |||  |   |   | || ||||||| || |||||||| |||||||| || |||||||||||  ||||||| || ||||| || 
gtattgaa-----tatcgtcgtcttgactgtgcatttcagagtgcttata-tatttactttccttca------tcaaaaaatatgcgttgtc--attaagggtttggtgggc--------atgtagcttacctctgatttgacaattgctttgtagATTGGTATAATTGATCCAGATTGTAGATTAATTGGACTCCATCTGTATGACGGCTTGTTCAAG

upper sequence: GLYMA05G30530.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 3'ss of exon 5
gtatttgaattgttttacttatatctactgataaaacttgggtagttatagtattctttcagttttgatatttttaacatttatgctttatctagtctaggatcagttgaaagttgttcaatgcatttcagctgttattccattttctttctgcagATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGATGGTTTGTTTAAA
               ||   || |  | | ||     ||   |  |  |  |   ||      || ||| |   | | | |  |   |||| |  | |   | || ||| |  | ||| |     ||| |  | |         |  | ||   ||||||| ||||||||||||||||| || || |||||||| || || |||||||| || ||||| 
--------------gtatcaattttaatttatgctctttttattttgttcatgaactactgtgttggatttcaattatactc-taaattattttttttgcaaccacttggacat-gttaaccatgttttaattttc--------tcttctccatagATTGGAATTATTGATCCTGATTGCAGATTAATTGGACTTCATTTATATGATGGATTATTTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcagttgaaagttgttcaatgcatttcagctgttattccattttctttctgcagATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGATGGTTTGTTTAAA
                              ctgttattccattttc  CT-rich tract
                                        attttcttt  TA-rich tract