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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaagttatttaaatatcttatgctatcttatgacaggttatggaatccttgaagtttcatattaaggtctgtttccttgcagATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTAGGAAAACATTTGGACATGACATATTCTGTCAAATGGGATTCTACCAATGTCA

Basic information

species Glycine max
transcript GLYMA05G30210.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30210.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G165631_T01 (Zea mays), 3'ss of exon 4
gttagaagttatttaaatatcttatgct-atcttatgacaggttatggaatccttgaagtt-tcatattaaggtctgtttccttgcagATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTAGGAAAACATTTGGACATGACATATTCTGTCAAATGGGATTCTACCAATGTCA
           |||   |||| |  ||| || | |   ||  |||   | |  |  | ||| ||||  |    |||||| || |||||||||| ||||||||||| ||||| || | |||||||| | | || ||    ||    ||||| |||||||||||||||||||||||  | || ||  | |
----------gtttgtgtatcatgagcttatatcacctcat-ttagccattagtataggttatcatccttgcctctgtt-ccatgcagATTATCCATGTTAATCTTACTCAAGAAAGCCCAAAGCTTATTGATGTGAATAAGGCATTGGATATGACATATTCTGTCAAATGGGAACCAACAAACATAA

upper sequence: GLYMA05G30210.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 3'ss of exon 5
gttagaagttatttaaatatcttatgctatcttatgacaggttat---ggaatccttgaagtttcatattaaggtctgtttccttgcagATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTAGGAAAACATTTGGACATGACATATTCTGTCAAATGGGATTCTACCAATGTCA
||| |  |||  |||| | || |||   ||| |||||  |||  |   || |||      |       |  | || | | | ||| ||||||||||||||||||||  |||| || | |||||| ||  |||||| ||||| |   || ||||||||||||||||| ||||||  | |||| | |||||
gtttgtggtttgttaactttcatataa-atcatatgatgggtcttcttgggatcacgtctgacaatgctctaagtttctattcttacagATTATTCATGTTAATCTTTCTCAAGAGAACCCAAAACCGATGGAAGCAGGAAGAACATTAGACATGACATATTCTGTTAAATGGATTCCTACTACTGTCA

upper sequence: GLYMA05G30210.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 5
gttagaagttatttaaatatcttatgctatcttatgacaggttatggaatccttgaagtttcatattaaggtctgtttccttgcagATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTAGGAAAACATTTGGACATGACATATTCTGTCAAATGGGATTCTACCAATGTCA
    |  | ||||| |  |  |||  |    | |  | |  | ||   | |      |||   ||| |   |||||||   | |||||||||||||||||||||||||| || |  || || || ||||||| ||| |||   ||||||||||||||||||||  |||||  | | ||  ||||  
----gttggtatttcataagtttaatcagaataacaaaacttcatctcacct----ggttgtttataagcatctgttt---ttcagATTATTCATGTTAATCTCACTCAAGACAGTCCTAAACCATTGGAAGAAGGGAAAGCCTTGGACATGACATATTCTGTTCAATGGATTCCAACAGATGTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208231223|gb|GE033482.1|GE033482
EST:     ATGTCATTTATACACACAAAAACATTATTGTTAAATACAACAATGATCAG                         ATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTGGGA
genomic: ATGTCATTTACACACACAAAAACATTATTGTTAAATACAACAATGATCAGgttagaagtt ... ttccttgcagATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTAGGA
EST: gi|208261580|gb|GE060425.1|GE060425
EST:     ATGTCATTTACACACACAAAAACATTATTGTTAAATACAACAATGATCAG                         ATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTAGGA
genomic: ATGTCATTTACACACACAAAAACATTATTGTTAAATACAACAATGATCAGgttagaagtt ... ttccttgcagATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgacaggttatggaatccttgaagtttcatattaaggtctgtttccttgcagATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTAGGAAAACATTTGGACATGACATATTCTGTCAAATGGGATTCTACCAATGTCA
                                        tctgtttcctt  CT-rich tract
                        aagtttcatattaa  TA-rich tract