Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaactgatgaattactccagtggatgtgctcacaaaattttgaaactgttaacatttcttgaacagtcttttgatttgcaatttcgaccttatcttacagAATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAAACAAAAACTTCTAAACCATCTGGAGGGGCATATGGTTCTGCATCATCTG

Basic information

species Glycine max
transcript GLYMA05G30150.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193646425|gb|FK591274.1|FK591274
EST:     ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAG                         AATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAA
genomic: ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGgttgggtagt ... tatcttacagAATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAA
EST: gi|6094874|gb|AW119541.1|AW119541
EST:     ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAG                         AATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAA
genomic: ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGgttgggtagt ... tatcttacagAATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAA
EST: gi|9985416|gb|BE659524.1|BE659524
EST:     ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAG                         AATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAA
genomic: ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGgttgggtagt ... tatcttacagAATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAA
EST: gi|192333661|gb|FK025772.1|FK025772
EST:     ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAA-G                         A-TGCATCCGTGGATGTGACAAAGTACACTAC
genomic: ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGgttgggtagt ... tatcttacagAATGCATCCGTGGATGTGACAAAGTACACTAC
EST: gi|5126756|gb|AI748492.1|AI748492
EST:     ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAG                         AATGCATGCGTGGATGTGACATACTACACTACTCCCTCTTCAGAGAAGCAA
genomic: ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGgttgggtagt ... tatcttacagAATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAA
EST: gi|193512894|gb|FK468664.1|FK468664
EST:     ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAG                         AATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAA
genomic: ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGgttgggtagt ... tatcttacagAATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAA
EST: gi|16106221|gb|BI893961.1|BI893961
EST:     ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAG                         AATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAA
genomic: ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGgttgggtagt ... tatcttacagAATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAA
EST: gi|207811734|gb|GD785979.1|GD785979
EST:     ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAG                         AATGCATCCGTGGA
genomic: ATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGgttgggtagt ... tatcttacagAATGCATCCGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttaacatttcttgaacagtcttttgatttgcaatttcgaccttatcttacagAATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAAACAAAAACTTCTAAACCATCTGGAGGGGCATATGGTTCTGCATCATCTG
                                          ccttatctt  CT-rich tract
                       ttttgattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaactgatgaattactccagtggatgtgctcacaaaattttgaaactgttaacatttcttgaacagtcttttgatttgcaatttcgaccttatcttacagAATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAAACAAAAACTTCTAAACCATCTGGAGGGGCATATGGTTCTGCATCATCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- actgatg
- - - - - - - - - -gtggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg