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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcatacatttccctatatttcttcatccctgtaatgactaatgagaagaaacaggagtattttaaagattcttttgatttttttgttgacctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCGCTTCATAGCGATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTG

Basic information

species Glycine max
transcript GLYMA05G30140.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30140.3 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0094g01550.t01 (Vitis vinifera), 3'ss of exon 5
atcatacatttccctatatttcttcatccctgtaatgactaatgagaagaaacaggagtattttaaagattcttttgatttttttgttgacctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCGCTTCATAGCGATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTG
|    |  |  | | ||   |  | |       |||    |   |  ||    |  | |   | ||   ||  |||    |   | | |   | |||||||||||| || || ||||| |||||||| || || |||||||||||  | ||||||||||| |||||  ||||| |   |||||| ||| | || || |||
agggaagttacctcaattgcttatgacatgaaaaatattcatctaatagtcttatcaatcagtcaagactttatttatggtagatctggctttatgacagAAAATATGGTCTCGATGACAACACTATTGATTTTATTGGTCATGCAATAGCGCTTCATAGAGATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322711|gb|FK014402.1|FK014402
EST:     ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGCCTTGATGACAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|193622227|gb|FK569603.1|FK569603
EST:     CTACTAAAGAGTTGATAGC                         AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: CTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|213598704|gb|DB964270.1|DB964270
EST:     ACCCACGAGGGGATGGACTTGACAAGAGTGTCTACTAAAGAGTTGATAGC                         AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|193327075|gb|FK292368.1|FK292368
EST:     ACCCACGAGGGGATGGACTTGACAAGAGTGTCTACTAAAGAGTTGATAGC                         AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|208259467|gb|GE053911.1|GE053911
EST:     AAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: AAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|192313374|gb|FK005146.1|FK005146
EST:     ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|207755010|gb|GD727407.1|GD727407
EST:     ACCCACGAGGGGATGGACTTGACAAGAGTGTCTACTAAAGAGTTGATAGC                         AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|208315534|gb|GE114296.1|GE114296
EST:     ACCCACGAGGGGATGGACTTGACAAGAGTGTCTACTAAAGAGTTGATAGC                         AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|208127908|gb|GD922140.1|GD922140
EST:     GGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: GGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|208182690|gb|GD980516.1|GD980516
EST:     ACCCACGAGGGGATGGACTTGGCAAGAGTGTCTACTAAAGAGTTGATAGC                         AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|19347279|gb|BM892159.1|BM892159
EST:     ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|6915949|gb|AW397479.1|AW397479
EST:     ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|193497014|gb|FK459492.1|FK459492
EST:     ATGGACTTGACAAGAGTGTCTACTAAAGAGTTGATAGC                         AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|7924853|gb|AW830879.1|AW830879
EST:     ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|208056662|gb|GD850351.1|GD850351
EST:     ACCCACGAGGGGATGGACTTGACAAGAGTGTCTACTAAAGAGTTGATAGC                         AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|254342789|gb|GR858951.1|GR858951
EST:     ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|208154706|gb|GD955759.1|GD955759
EST:     ACCCACGAGGGGATGGACTTGACAAGAGTGTCTACTAAAGAGTTGATAGC                         AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagaaacaggagtattttaaagattcttttgatttttttgttgacctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCGCTTCATAGCGATGATCGCTACTTGGCTGAGCCAGCACTGGACACCGTG
                                       tgttgac  putative branch site (score: 3)
             tattttaaagattctt  TA-rich tract