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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgatattgtccgttttccatcttgtttttactatactcataataaataggtaatataaggagctttgttttgcagCTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGAATTATCTCAAGTTGTTTTGGAATTTAGACCTGTGTGACCAGTCACCGCTAAATTTTACAGAGC

Basic information

species Glycine max
transcript GLYMA05G29410.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29410.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv10s0003g01700.t01 (Vitis vinifera), 3'ss of exon 5
gtaacgatattgt-ccgttttccatcttgtttttactatactcataataa-ataggtaatataaggagcttt--gttttgcagCTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGAATTATCTCAAGTTGTTTTGGAATTTAGACCTGTGTGACCAGTCACCGCTAAATTTTACAGAGC-----
|||  |  |   | || | | ||||  | |    |  || |   |  | | || ||||| | ||| |  | |  |||||||||||||||||||||||| || ||| |||||||||| ||||  |     || || | ||       |   | |||| |  |  |  | |  ||||| |  ||      
gta-tgccaccctaccatctaccattctttcagaatcatgccttttctcatattggtaacacaagaaattatccgttttgcagCTGGAAGAACAATTCCAAGCTGCAGTTGCCTGCTTGAACCAAAGAGAGATGGTATG----CGGGGTTTATGTGGCATGGAAAGGATGCATTTT-CGTAGTTTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405068|gb|EV274882.1|EV274882
EST:     GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAG                         CTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGAATTATCTCAAGTTG
genomic: GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAGgtaacgatat ... tgttttgcagCTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGAATTATCTCAAGTTG
EST: gi|192294404|gb|FG987333.1|FG987333
EST:     GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAG                         CTGGAAGA-CAAT
genomic: GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAGgtaacgatat ... tgttttgcagCTGGAAGAACAAT
EST: gi|16343489|gb|BI969084.1|BI969084
EST:     GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAG                         CTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGAATTATCTCAAGTTG
genomic: GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAGgtaacgatat ... tgttttgcagCTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGAATTATCTCAAGTTG
EST: gi|193492847|gb|FK459569.1|FK459569
EST:     GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAG                         CTGGAAGAACAATTCG
genomic: GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAGgtaacgatat ... tgttttgcagCTGGAAGAACAATTCG
EST: gi|22933449|gb|BU550588.1|BU550588
EST:     GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAG                         CTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGAATTATCTCAAGTTG
genomic: GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAGgtaacgatat ... tgttttgcagCTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGAATTATCTCAAGTTG
EST: gi|6726058|gb|AW310457.1|AW310457
EST:     GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAG                         CTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGAATTATCTCAAGTTG
genomic: GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAGgtaacgatat ... tgttttgcagCTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGAATTATCTCAAGTTG
EST: gi|192300473|gb|FG991485.1|FG991485
EST:     GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAG                         CTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGAATTATCTCAAGTTG
genomic: GTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAGgtaacgatat ... tgttttgcagCTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGAATTATCTCAAGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtttttactatactcataataaataggtaatataaggagctttgttttgcagCTGGAAGAACAATTCGAAACTGAAGTTGCCTGCCTGAATTATCTCAAGTTGTTTTGGAATTTAGACCTGTGTGACCAGTCACCGCTAAATTTTACAGAGC
                                          ctttgtttt  CT-rich tract
           tatactcataataaat  TA-rich tract