Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatcaacctgttacttgtcttaattgtttttgttacatgattgtttgctgaaggcttcatatttatttttctctaacagaatgaaattatttatgtgcagGGAATTAAGTTCTTTGAGCCAGAG

Basic information

species Glycine max
transcript GLYMA05G29330.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208152215|gb|GD950104.1|GD950104
EST:     TTGTTGGCCCCAAGGAAGGAGACACTCCAGACAGAGCAAAATACAGCCAA                         GGAATTAAGTTCTTTGAGCCAGAG
genomic: TTGTTGGCCCCAAGGAAGGAGACACTCCAGACAGAGCAAAATACAGCCAAgtatgtccat ... ttatgtgcagGGAATTAAGTTCTTTGAGCCAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgaaggcttcatatttatttttctctaacagaatgaaattatttatgtgcagGGAATTAAGTTCTTTGAGCCAGAG
                         ctctaac  putative branch site (score: 2)
             atatttatttttctct  TA-rich tract