Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcacatgccatttgttttattggtttgctctggactcttgagtctgaattttaccatgaagttgatttgtgcaaaactaattttgttctgaggtacaaatacctcttagtacctaaagaaatgatgttttggattttcagAGCATAAAAGAGAAATTGGGACAAGTTGCACGTTCTATGGGTCAGCCTTCACCTACTG

Basic information

species Glycine max
transcript GLYMA05G28150.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209706858|gb|BW661494.1|BW661494
EST:     TGGAAGAATTTGACCTTCCTTACAGGGCCGTTAGCAATGTGGAATTTGAG                         AGCATAAAAGAGAAATTGGGACAAGTTGCACGTTCTATGGGTCAGCCTTCA
genomic: TGGAAGAATTTGACCTTCCTTACAGGGCCGTTAGCAATGTGGAATTTGAGgtagtcacat ... ggattttcagAGCATAAAAGAGAAATTGGGACAAGTTGCACGTTCTATGGGTCAGCCTTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgaggtacaaatacctcttagtacctaaagaaatgatgttttggattttcagAGCATAAAAGAGAAATTGGGACAAGTTGCACGTTCTATGGGTCAGCCTTCACCTACTG
                         acctaaa  putative branch site (score: 3)
                                                ttttc  putative PPT
                            taaagaaat  TA-rich tract