Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggatttttcaaggcataatgatatactgtctttggacactgcattttacctgctttcttgatttgttaatcttggttgttgtctttttcatacgattatctgttaatatttctagGTACTTCCTATTTAGAGTTTATTAAAGGGTCGTCATTTCACTCGGACATTCCCACAGCACCTGTACAAT

Basic information

species Glycine max
transcript GLYMA05G26640.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335913|gb|CO979779.1|CO979779
EST:     GCATAAAACTGTTTTTAATGGACCGCAGATACGGTATATTTCAAAAAATG                         GTACTTCCTATTTAGAGTTTATTAAAGGGTCGTCATTTCACTCGGACATTC
genomic: GCATAAAACTGTTTTTAATGGACCGCAGATACGGTATATTTCAAAAAATGgtaggatttt ... atatttctagGTACTTCCTATTTAGAGTTTATTAAAGGGTCGTCATTTCACTCGGACATTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgttaatcttggttgttgtctttttcatacgattatctgttaatatttctagGTACTTCCTATTTAGAGTTTATTAAAGGGTCGTCATTTCACTCGGACATTCCCACAGCACCTGTACAAT
                                        tgttaat  putative branch site (score: 3)
                                              tatttct  CT-rich tract
                                  attatctgttaatatt  TA-rich tract