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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcatttgtcttggttcagtttttcttgcattattcggttacatcctcatcagtttatgtattgcagATTCTGCTTCTTCAGTGCAAATACACTGGTACATCATGACCAGTCCATTCACTGATGAGGCAACACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCT

Basic information

species Glycine max
transcript GLYMA05G26240.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924327|gb|AW830353.1|AW830353
EST:     TGAGAGGATTTTGCGTGCACATAGACTAGCTGCTCAAGCTACAAATGAGA                         ATTCTGCTTCTTCAGTGCAAATACACTGGTACATCATGACCAGTCCATTCA
genomic: TGAGAGGATTTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGAgtaagtttca ... tgtattgcagATTCTGCTTCTTCAGTGCAAATACACTGGTACATCATGACCAGTCCATTCA
EST: gi|151393104|gb|EV262979.1|EV262979
EST:     TGAGAGGATTT-GTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGA                         ATTCTGCTTCTTCAGTGCAAATACACTGGTACATCATGACCAGTCCATTCA
genomic: TGAGAGGATTTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGAgtaagtttca ... tgtattgcagATTCTGCTTCTTCAGTGCAAATACACTGGTACATCATGACCAGTCCATTCA
EST: gi|13480594|gb|BG509937.1|BG509937
EST:     GAGAGGATTNTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGA                         ATTCTGCTTCTTCAGTGCA
genomic: GAGAGGATT-TTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGAgtaagtttca ... tgtattgcagATTCTGCTTCTTCAGTGCA
EST: gi|254340891|gb|GR854619.1|GR854619
EST:     TGAGAGGATTTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGA                         ATTCTGCTTCTTCAGTGCAAATACACTGGTACATCATGACCAGTCCATTCA
genomic: TGAGAGGATTTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGAgtaagtttca ... tgtattgcagATTCTGCTTCTTCAGTGCAAATACACTGGTACATCATGACCAGTCCATTCA
EST: gi|254346278|gb|GR859891.1|GR859891
EST:     TGAGAGGATTTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGA                         ATTCTGCTTCTTCAGTGCAAATACACTGGTACATCATGACCAGTCCATTCA
genomic: TGAGAGGATTTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGAgtaagtttca ... tgtattgcagATTCTGCTTCTTCAGTGCAAATACACTGGTACATCATGACCAGTCCATTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttcagtttttcttgcattattcggttacatcctcatcagtttatgtattgcagATTCTGCTTCTTCAGTGCAAATACACTGGTACATCATGACCAGTCCATTCACTGATGAGGCAACACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCT
                                         tttatgtatt  TA-rich tract