Sequence
atgc intronic sequence ATGC exonic sequencegtaggttgtttacaaaatctagccgtaatacagttgccaaaataggtctacacaggaacattgatagttgcttcttttatgtagatttttcaactataagctattttctttaaacaatgtgttagcttttttcttaaacatatacttgagtttaattttactcctcacaaactaaaagtgatcattgggttacagAGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAAGAAACACGAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTT
Basic information
species | Glycine max |
transcript | GLYMA05G26100.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G26100.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv10s0003g03500.t01 (Vitis vinifera), 3'ss of exon 10
gtaggttgtttacaaaatctagccgtaatacAGTTGCCAAAATAGGTCTACACAGGAACATTGATAGTTGCTTCTTTTATGTAGATTTTTCAACTATAAGCTATTTTCTTTAAACAATGTGTTAGCTTTTTTCTTAAACATATACTTGAGTTTAATTTTACTCCTCACAAACTAAAAGTGATCATTGGGTTACAGAGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAAGAAACACGAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTT
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----------------------------------------------------------------------------ccatctagacatacagagcatgcatatctttcttgtaaaaac-----aggatttttctaa------tgctttcaagtaatttg------cactga--gagattagttattggcttacagAGCTGCCGAAGGTGGGACCAATCAAACATGATGACATAGAGACGGCTTTGAAGAACACAAGACCATCTGCTCATCTCCATGTCCACCGTTATGATAAGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9259433|gb|BE347580.1|BE347580EST: ACGCCTAATGTCGCAACTTGAGCAGAGCCAGGATGTGGTGCCTGAAGAAG AGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTGTAA
genomic: ACGCCTAATGTCGCAACTTGAGCAGAGCCAGGATGTGGTGCCTGAAGAAGgtaggttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatacttgagtttaattttactcctcacaaactaaaagtgatcattgggttacagAGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAAGAAACACGAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTT
aactaaa putative branch site (score: 2)
ttgagtttaatttta TA-rich tract