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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattatgtaactttgattctaacactagaaagttagaagattgaattgatttcagtattacatgttctcctgtttatttttcttttacctttacattgctttggtgctaaaagagctatctggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTGCAAAAACTCGACTAACATTGACTCTGTTATCGATTGGCTTGTAAAGCAC

Basic information

species Glycine max
transcript GLYMA05G22480.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G22480.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g10370.1 (Oryza sativa), 3'ss of exon 4
gtaagattatgtaactttgattctaacactagaaagttagaagattgaattgatttcagtattacatgttctcctgtttatttttcttttacctttacattgctttggtgctaaaagagctatctggtat-gcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTGCAAAAACTCGACTAACATTGACTCTGTTATCGATTGGCTTGTAAAGCAC
                                          |   | |     |    |||||||      ||  |    |||||||   |    |||   || || | | | |||   ||| ||  || ||||||  || ||| |||| |||||| |||||||    ||||||||||| || ||||| |||||||| |||||||||||||| ||||| ||||| || ||||||
------------------------------------------gtaagtacacgctaagctattacaga----ccgataaggttttcttacgc----acaaacctgtgtt-cgacaagttatatgtgacattgcagGGGGCTAAAGACAATCACTGACCGAGAAGTGGCATGCTTCATGATATCATGCAAGAACTCGACAAACATTGACTCTGTCATCGACTGGCTCGTGAAGCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254326937|gb|GR836546.1|GR836546
EST:     AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|17022902|gb|BM093936.1|BM093936
EST:     AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|17021639|gb|BM092673.1|BM092673
EST:     AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|208294521|gb|GE094312.1|GE094312
EST:     AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGAT
genomic: AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGAT
EST: gi|208329584|gb|GE127161.1|GE127161
EST:     AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|208302928|gb|GE099545.1|GE099545
EST:     AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|151410869|gb|EV280684.1|EV280684
EST:     AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|193425959|gb|FK386984.1|FK386984
EST:     GATTGACAAACCTTGGGGTTCTTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
genomic: GATTGACAAACC-TGGGGTTC-TGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttcttttacctttacattgctttggtgctaaaagagctatctggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTGCAAAAACTCGACTAACATTGACTCTGTTATCGATTGGCTTGTAAAGCAC
                             tgctaaa  putative branch site (score: 2)
              tttacatt  TA-rich tract