Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaattatagctataggctacaacttactggttatatgtgacatgctcttggcattatttgatatgaagtctaattttgaatctacatgtacaaaatcgtgtaattctgggtttgatcatcttacttcatgtagATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGACCAGCTTGTCAAAATAGCTAAG

Basic information

species Glycine max
transcript GLYMA05G22250.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G22250.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g10940.1 (Oryza sativa), 3'ss of exon 5
gtgagaattatagctataggctacaacttactggttatatgtgacatgctcttggcattatt-tgatatgaagtctaattttgaatctacatgtacaaa-atcgtgtaattctgggtttgatcatcttacttcatgtagATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGACCAGCTTGTCAAAATAGCTAAG
                |  | |    | | ||     |||   | |  || |    |||    ||   | |  |||     | | | | | | || ||| || |      |   | |||  | |   |  || ||| ||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||| |||
---------------gtgtgtt-tgccctcctatgattataaaataacctatcaaaattgccatggccttacttctgtaaattact-tgcgtatagaaagatagcaactgttatgctttatttactgtttttgatgcagATATTTCGCAAGGAACCATTCTTCTATGGCCACGATAACCATGACCAGCTTGTCAAAATAGCCAAG

upper sequence: GLYMA05G22250.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0001g09320.t01 (Vitis vinifera), 3'ss of exon 5
gtgagaattatagctataggctacaacttactggttatatgtgacatgctcttg-gcattatttgatatgaagtctaattttgaatctacatgtacaaaatcgtgtaattctgggtttgatcatcttacttcatgtagATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGACCAGCTTGTCAAAATAGCTAAG
              ||   | ||||   |    |||     | |  | || ||    |||| |||| ||| ||| |   ||   ||| | |  |  ||  |      | ||      ||    | ||  | |    |||| ||||||||||| || |||||||||||||| || || |||||||||||||| ||||| || |||
-------------gtaacagttacag--tggcagttggtgttaattttcttttacatattacttgaaatgcagtttgtctt---atcaataaatgtaactttcaactactcaa----tggaggtttttttcccaacagATTTTTCGCAAGGAGCCATTCTTTTATGGTCATGATAATCATGACCAGCTTGTAAAAATTGCCAAG

upper sequence: GLYMA05G22250.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv07s0129g00410.t01 (Vitis vinifera), 3'ss of exon 5
gtgagaattatagctataggctacaacttactggttatatgtgacatgctcttggcattatttgatatgaagtctaattttgaatctacatgtacaaaatcgtgtaattctgggtttgatcatcttacttcatgtagATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGACCAGCTTGTCAAAATAGCTAAG
|||||| |||   |||  |   |       || |    || |||   |||  | |    |||| | ||    | |  | || | | ||  | |     ||  |||  | ||  || |  |  | ||| || |||||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| || || |||
gtgagatttactactactgttgat------cttgaatcatttgaagggctgattgtgccattt-acat---tttttgtatttattttaattatc----attttgttttactcagtatacttctatta-tttatgtagATCTTTCGCAAGGAACCATTCTTTTATGGTCATGACAATCATGATCAGCTTGTCAAGATTGCCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27424640|gb|CA936160.1|CA936160
EST:     ATGACTACTCATTAGACATGTGGAGTCTTGGCTGCATGTTTGCTGGAATG                         ATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGACCAGCTT
genomic: ATGACTACTCATTAGACATGTGGAGTCTTGGCTGCATGTTTGCTGGAATGgtgagaatta ... cttcatgtagATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGACCAGCTT
EST: gi|13240224|gb|BG359541.1|BG359541
EST:     ATGACTACTCATTAGACATGTGGAGTCTTGGCTGCATGTTTGCTGGAATG                         ATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGACCAGCTT
genomic: ATGACTACTCATTAGACATGTGGAGTCTTGGCTGCATGTTTGCTGGAATGgtgagaatta ... cttcatgtagATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGACCAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctacatgtacaaaatcgtgtaattctgggtttgatcatcttacttcatgtagATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGACCAGCTTGTCAAAATAGCTAAG
                                       atcttac  putative branch site (score: 3)
                                        tcttacttc  CT-rich tract
          tacaaaat  TA-rich tract