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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtttcagttcttgtattcacacatgtgttcccatatatattcatattaataagttttattcttgcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG

Basic information

species Glycine max
transcript GLYMA05G21910.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G21910.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 8
gtgaggtttcagtt--cttgtattcacacatgtgttcccatatata--ttcatattaataagttttattctt--gcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG
|||||  ||    |  |||| |||    |||||||| |  |   ||  ||| ||  | | |  |    | ||  ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |
gtgagcattttcctggcttgcattt---catgtgttactgttcttaatttcctagaactcacctcagcttttctgcagGACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16342055|gb|BI967650.1|BI967650
EST:     ATGCAACTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTT                         GACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT
genomic: ATGCAACTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttc ... attcttgcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT
EST: gi|51337917|gb|CO981783.1|CO981783
EST:     ATGCAACTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTT                         GACATTTNNNTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT
genomic: ATGCAACTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttc ... attcttgcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattcacacatgtgttcccatatatattcatattaataagttttattcttgcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG
                               tattaat  putative branch site (score: 2)
                                         ttttattctt  putative PPT
                    atatatattcatatta  TA-rich tract