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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctgtctgttacattatttaatagttcatgccactcttttaattgcagcttaattaacagctaggatttacttgcatttcagTGATGTCTCTCAACTCTCTAAAAGTTTTCCAGTGGTTGACATGGTATTTGGAAATGGTCACAAGTACTCACTGTCACCTGAAAACTACATGTTTCGG

Basic information

species Glycine max
transcript GLYMA05G21800.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G21800.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os07g40260.1 (Oryza sativa), 3'ss of exon 5
gtatgtctgtctgttacattatt-taatagttcatgccactcttttaattgcagcttaattaacagctaggatttacttgcatttcagTGATGTCTCTCAACTCTCTAAAAGTTTTCCAGTGGTTGACATGGTATTTGGAAATGGTCACAAGTACTCACTGTCACCTGAAAACTACATGTTTCGG
       |  || || ||  ||  ||| | ||  | ||   | |||  || || | | | |            | ||||    |||||  | ||||| ||| | ||  |    |||||||  ||||||||||||||||||||||| || |||   || || ||||||||||||||  |||| |||
------gtaactcttgcaccatgataacaatttctacc--ccctttgttttcatcatcaatgttcttatcttatcactttaccttcagGAACGTCTCCCAATTATCAGAGGTATTTCCAGATGTTGACATGGTATTTGGAAATGGGCAGAAGCTTTCGCTTTCACCTGAAAACTATTTGTTCCGG

upper sequence: GLYMA05G21800.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G090715_T02 (Zea mays), 3'ss of exon 3
------------gtatgtctg---tctgttacattatttaatagttcatgccactcttttaattgcagcttaattaacagctagg-atttac--ttgcatttc-agTGATGTCTCTCAACTCTCTAAAAGTTTTCCAGTGGTTGACATGGTATTTGGAAATGGTCACAAGTACTCACTGTCACCTGAAAACTACATGTTTCGG
              |||  |    | |||| |      | |   ||| |   |  |  || ||    | ||   ||  |  ||   |||||   |  || ||| ||  | |||||  | ||   | |    |||||||  ||||||||||||||||||||||| || |||  ||||||  |||||||||| ||  | || |||
gtgactttcgcaccatgattaaaatttgtttctcatcctcagttttcttataatacgcttcatgat-gtttgtgtagaacttatatatttatggtctcacttccagGAACGTCTCAAAGCTACATGAGGTATTTCCAGATGTTGACATGGTATTTGGAAATGGACAGAAGCTCTCACTTACACCTGAAAATTATTTATTCCGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgccactcttttaattgcagcttaattaacagctaggatttacttgcatttcagTGATGTCTCTCAACTCTCTAAAAGTTTTCCAGTGGTTGACATGGTATTTGGAAATGGTCACAAGTACTCACTGTCACCTGAAAACTACATGTTTCGG
                        aattaac  putative branch site (score: 2)
                                       tttactt  putative PPT
       tcttttaatt  TA-rich tract