1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttatcatatctatattttcttgaaatgtctattagcaatatagtgtccaccaattattttccataggttaattgaaagtttgtttttttgtgttccacagGGTGGGTCTGGCTCGGTCCAAAACATCATGTTCTCCAATGTTCAAGTTTCTGGGGTTCAAATTCCAATTTTGATCGACCAATACTATTGTGATGGTGGCA
species | Glycine max |
transcript | GLYMA05G08730.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGTTACTATCCAAAATACTCTCACTGGTGTCAGAATTAAAACATGGCAG GGTGGGTCTGGCTCGGTCCAAAACATCATGTTCTCCAATGTTCAAGTTTCTEST: gi|21677302|gb|BQ629653.1|BQ629653
genomic: ATGTTACTATCCAAAATACTCTCACTGGTGTCAGAATTAAAACATGGCAGgtatagtcaa ... tgttccacagGGTGGGTCTGGCTCGGTCCAAAACATCATGTTCTCCAATGTTCAAGTTTCT
EST: TGTTACTATCCAAAATACTCTCACTGGTGTCA-AATAAAAACATTGGCAG GGTGGGTCTGGCTCGGTCCAAAACATCATGTTCTCCAATGTTCAAGTTTC
genomic: TGTTACTATCCAAAATACTCTCACTGGTGTCAGAATTAAAACAT-GGCAGgtatagtcaa ... tgttccacagGGTGGGTCTGGCTCGGTCCAAAACATCATGTTCTCCAATGTTCAAGTTTC
tccaccaattattttccataggttaattgaaagtttgtttttttgtgttccacagGGTGGGTCTGGCTCGGTCCAAAACATCATGTTCTCCAATGTTCAAGTTTCTGGGGTTCAAATTCCAATTTTGATCGACCAATACTATTGTGATGGTGGCA
ggttaat putative branch site (score: 4)
tttttttgtgttcc putative PPT
ttaattgaaagtttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatcatatctatattttcttgaaatgtctattagcaatatagtgtccaccaattattttccataggttaattgaaagtttgtttttttgtgttccacagGGTGGGTCTGGCTCGGTCCAAAACATCATGTTCTCCAATGTTCAAGTTTCTGGGGTTCAAATTCCAATTTTGATCGACCAATACTATTGTGATGGTGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - -tgtccac