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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttcactgatcccatgttagatttgttgtctttaggagttttgaaaacttgcatctttaagaccaaggcacctgctataattcttaactattattgtgtttccttttgtagGTGTATCCTATGTATAAAGCTTTTATCGAGCCAGATCTCCAAACAGCCCATTTAAAAATTATTAACAAGTTTAATCCATTCTCTGGATTTCAGAATCCCA

Basic information

species Glycine max
transcript GLYMA05G07610.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G07610.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv17s0000g04650.t01 (Vitis vinifera), 3'ss of exon 3
gt-ttttcactgatcccatgttaga----tttgttgtctttagga---gttttgaaaacttgcatctttaagaccaaggcacctgctataattcttaactattattgtgtttccttttgtagGTGTATCCTATGTATAAAGCTTTTATCGAGCCAGATCTCCAAACAGCCCATTTAAAAATTATTAACAAGTTTAATCCATTCTCTGGATTTCAGAATCCCA
|| |||||||| || | ||||||||    ||| ||  ||| | ||   ||| ||  | |    |  | |      || |||  |  | || |||| | |   |      ||   ||    |||| ||||||||||| || |||||||| ||||||||||| |||||||| ||| ||||||| || ||||| || ||||||||| ||||||||||||| ||||
gtgttttcacttatactatgttagaaagttttctttacttaatgaactgttatggtagcccttaattattcatataaagcatttattgtacttctcatcagct------ttcttttacacagGTATATCCTATGTACAAGGCTTTTATTGAGCCAGATCTACAAACAGCACATATAAAAATCATCAACAAATTCAATCCATTCACTGGATTTCAGAACCCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagaccaaggcacctgctataattcttaactattattgtgtttccttttgtagGTGTATCCTATGTATAAAGCTTTTATCGAGCCAGATCTCCAAACAGCCCATTTAAAAATTATTAACAAGTTTAATCCATTCTCTGGATTTCAGAATCCCA
                         tcttaac  putative branch site (score: 2)
                                     ttgtgtttcctttt  putative PPT
                   tataattcttaactat  TA-rich tract