1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgttggatatacttgctggcattatgatatatctacttgttatatatacctagtcctgacttttcatttgtactgctttaccaaactttttatatttagGCCCTCTTTCGAAAAATTGCTGCTGCATTACCCGGAATGGAAACACTATCTACAACAAAACAGGAAGATATGGTCGACGTGAACCTGAGGTCTTCTGGTA
species | Glycine max |
transcript | GLYMA05G05860.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAAACGTTATGTTTATTGAGGCTAGTGCAAAAGCCGGCTTTAATATAAAG GCCCTCTTTCGAAAAATTGCTGCTGCATTACCCGGAATGGAAACACTATCTEST: gi|13252783|gb|BG363686.1|BG363686
genomic: TAAACGTTATGTTTATTGAGGCTAGTGCAAAAGCCGGCTTTAATATAAAGgtaagcctct ... ttatatttagGCCCTCTTTCGAAAAATTGCTGCTGCATTACCCGGAATGGAAACACTATCT
EST: TAAACGTTATGTTTATTGAGGCTAGTGCAAAAGCCGGCTTTAATATAAAG GCCCTCTTTCGAAAAATTGCTGCTGCATTACCCGGAATGGAAACACTATCTEST: gi|192321239|gb|FK014329.1|FK014329
genomic: TAAACGTTATGTTTATTGAGGCTAGTGCAAAAGCCGGCTTTAATATAAAGgtaagcctct ... ttatatttagGCCCTCTTTCGAAAAATTGCTGCTGCATTACCCGGAATGGAAACACTATCT
EST: TAAACGTTATGTTTATTGAGGCTAGTGCAAAAGCCGGCTTTAATATAAAG GCCCTCTTTCGAAAAATTGCTGCTGCATTACCCGGAATGGAAACACTATCTEST: gi|31459979|gb|CD402007.1|CD402007
genomic: TAAACGTTATGTTTATTGAGGCTAGTGCAAAAGCCGGCTTTAATATAAAGgtaagcctct ... ttatatttagGCCCTCTTTCGAAAAATTGCTGCTGCATTACCCGGAATGGAAACACTATCT
EST: TAAACGTTATGTTTATTGAGGCTAGTGCAAAAGCCGGCTTTAATATAAAG GCCCTCTTTCGAAAAATTGCTGCTGCATTACCCGGAATGGAAACACTATCTEST: gi|192322379|gb|FK014620.1|FK014620
genomic: TAAACGTTATGTTTATTGAGGCTAGTGCAAAAGCCGGCTTTAATATAAAGgtaagcctct ... ttatatttagGCCCTCTTTCGAAAAATTGCTGCTGCATTACCCGGAATGGAAACACTATCT
EST: TAAACGTTATGTTTATTGAGGCTAGTGCAAAAGCCGGCTTTAATATAAAG GCCCTCTTTCGAAAAATTGATGCTGCATTACCCGGAATGGAAACACTATCT
genomic: TAAACGTTATGTTTATTGAGGCTAGTGCAAAAGCCGGCTTTAATATAAAGgtaagcctct ... ttatatttagGCCCTCTTTCGAAAAATTGCTGCTGCATTACCCGGAATGGAAACACTATCT
tatacctagtcctgacttttcatttgtactgctttaccaaactttttatatttagGCCCTCTTTCGAAAAATTGCTGCTGCATTACCCGGAATGGAAACACTATCTACAACAAAACAGGAAGATATGGTCGACGTGAACCTGAGGTCTTCTGGTA
tcctgac putative branch site (score: 2)
ctttttat putative PPT
tttaccaaacttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttggatatacttgctggcattatgatatatctacttgttatatatacctagtcctgacttttcatttgtactgctttaccaaactttttatatttagGCCCTCTTTCGAAAAATTGCTGCTGCATTACCCGGAATGGAAACACTATCTACAACAAAACAGGAAGATATGGTCGACGTGAACCTGAGGTCTTCTGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
atgttgg
- - - - - - - tgctggc
- - - - - - - - - - - - - - - - -ctacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaact