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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaaagttcaaatcctcaactcgtgatttatcggaaattctttaccgttatctaagttgttctgatacattaggttggtttggtatcttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAG

Basic information

species Glycine max
transcript GLYMA05G05580.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398929|gb|EV268800.1|EV268800
EST:     ACCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|151409699|gb|EV279507.1|EV279507
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|192316102|gb|FK007163.1|FK007163
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACATGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|17023266|gb|BM094300.1|BM094300
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|151410148|gb|EV279956.1|EV279956
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|6726203|gb|AW310557.1|AW310557
EST:     AAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: AAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|192307027|gb|FK000005.1|FK000005
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCC
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCC
EST: gi|17023184|gb|BM094218.1|BM094218
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|213599163|gb|DB962242.1|DB962242
EST:     ATCTCTGAATGTTTTCCACCCAAATGCAACATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTAT
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTAT
EST: gi|213620263|gb|DB961408.1|DB961408
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|192303847|gb|FG998199.1|FG998199
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTT
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTT
EST: gi|192316103|gb|FK007164.1|FK007164
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACATGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaccgttatctaagttgttctgatacattaggttggtttggtatcttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAG
                  ttctgat  putative branch site (score: 3)
                                            tcttgtttc  putative PPT
      ttatctaa  TA-rich tract