1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...gttccatttagctttgatggaggctttagttaacctatgcaatggggttttatagaattgtttcacacctaattattttccttattctttttgttggcagTATTATTATGTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAA
species | Glycine max |
transcript | GLYMA05G03970.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCATTGCCCACCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAA TATTATTATGTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAAEST: gi|193421450|gb|FK389623.1|FK389623
genomic: CCATTGCCCACCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAAgtacatatct ... ttgttggcagTATTATTATGTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAA
EST: CCATTGCCCACCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAA TATTATTATGTTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAEST: gi|193343817|gb|FK311521.1|FK311521
genomic: CCATTGCCCACCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAAgtacatatct ... ttgttggcagTATTATTATGTTTTT-GTCCGACATGTCTGGAAGGAAACCCTTGTACAGGA
EST: CCATTGCCCACCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAA TATTATTATGTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAAEST: gi|193345000|gb|FK311626.1|FK311626
genomic: CCATTGCCCACCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAAgtacatatct ... ttgttggcagTATTATTATGTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAA
EST: CATTGCCCACCATGGATGCTATATAACTTCATCCAGCCAACCAGAGAGAA TATTATTATGTTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAEST: gi|193421324|gb|FK388671.1|FK388671
genomic: CATTGCCCACCATGGATGCTATATA-CTTCATCCAGCCAACCAGAGAGAAgtacatatct ... ttgttggcagTATTATTATGTTTTT-GTCCGACATGTCTGGAAGGAAACCCTTGTACAGGA
EST: CCATTGCCCACCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAA TATTATTATGTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAAEST: gi|193405470|gb|FK372105.1|FK372105
genomic: CCATTGCCCACCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAAgtacatatct ... ttgttggcagTATTATTATGTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAA
EST: CCATTGCCCACCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAA TATTATTATGTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAAEST: gi|193349521|gb|FK318639.1|FK318639
genomic: CCATTGCCCACCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAAgtacatatct ... ttgttggcagTATTATTATGTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAA
EST: CCATTGCCCACCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAA TATTATTATGTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAAEST: gi|193435828|gb|FK399432.1|FK399432
genomic: CCATTGCCCACCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAAgtacatatct ... ttgttggcagTATTATTATGTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAA
EST: CATTGCCCACCCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAA TATTATTATGTTTTTGTTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAEST: gi|193349384|gb|FK314106.1|FK314106
genomic: CATTGCCCACC-ATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAAgtacatatct ... ttgttggcagTATTATTATGTTTTTGT-CCGACATGTCTGGAAGGAAACCCTTGTACAGGA
EST: CCATTGCCCACCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAA TATTATTATGTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAA
genomic: CCATTGCCCACCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAAgtacatatct ... ttgttggcagTATTATTATGTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAA
ggttttatagaattgtttcacacctaattattttccttattctttttgttggcagTATTATTATGTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAA
acctaat putative branch site (score: 3)
ttattttccttattct CT-rich tract
taattattttccttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttccatttagctttgatggaggctttagttaacctatgcaatggggttttatagaattgtttcacacctaattattttccttattctttttgttggcagTATTATTATGTTTTTGTCCGACATGTCTGGAAGGAAACCCTTGTACAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -ccattta
- - - - - - - -gatggag
- - - - - - - - - - - - - - - - -cctatgc
- - - - - - - - - - - - - - - - - - - - - -ggggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacacc