1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...caacaacataaattgagttcattcacttcttttcttgttcctaaaaactggcttttacctagcaatggtgcttttctgtttatttaatggcaaaaaatagGAAATCATTGATGCAGCATCTCATGTCCCACCACCTCCCTCAGAAGATCAAAAGAAGAAAATTGCAAAGAT
species | Glycine max |
transcript | GLYMA05G03930.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGATAACATTGAGGATGCTTTGGCAAAGCTTCAG GAAATCATTGATGCAGCATCTCATGTCCCACCACCTCCCTCAGAEST: gi|51336716|gb|CO980582.1|CO980582
genomic: GGATAACATTGAGGATGCTTTGGCAAAGCTTCAGgtaacactgg ... caaaaaatagGAAATCATTGATGCAGCATCTCATGTCCCACCACCTCCCTCAGA
EST: GGATAACATTGAGGATGCTTTGGCAAAGCTTCAG GAAATCATTGATGCAGCATCTCATGTCCCACCACCTCCCTCAGAAGATCAAEST: gi|9901632|gb|BE610600.1|BE610600
genomic: GGATAACATTGAGGATGCTTTGGCAAAGCTTCAGgtaacactgg ... caaaaaatagGAAATCATTGATGCAGCATCTCATGTCCCACCACCTCCCTCAGAAGATCAA
EST: GGATAACATTGAGGATGCTTTGGCAAAGCTTCAG GAAATCATTGATGCAGCATCTCATGTCCCACCACCTCCCTCAGAAGATCAA
genomic: GGATAACATTGAGGATGCTTTGGCAAAGCTTCAGgtaacactgg ... caaaaaatagGAAATCATTGATGCAGCATCTCATGTCCCACCACCTCCCTCAGAAGATCAA
aactggcttttacctagcaatggtgcttttctgtttatttaatggcaaaaaatagGAAATCATTGATGCAGCATCTCATGTCCCACCACCTCCCTCAGAAGATCAAAAGAAGAAAATTGCAAAGAT
atttaat putative branch site (score: 4)
tttatttaatggcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacaacataaattgagttcattcacttcttttcttgttcctaaaaactggcttttacctagcaatggtgcttttctgtttatttaatggcaaaaaatagGAAATCATTGATGCAGCATCTCATGTCCCACCACCTCCCTCAGAAGATCAAAAGAAGAAAATTGCAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
caacaac
- - - - - - - - - -cattcac
- - - - - - - - - - - - - - - - - - gttccta
- - - - - - - - - - - - - - - - - - - - - - - -ctggctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctagca