1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgtttaggttgttttgtctggacctcagctaaaatacagacattactattccttgtgcactcactgctattttataatgtctttgcctgctttatttagGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGCAGAATGGCTCGA
species | Glycine max |
transcript | GLYMA05G03150.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCCCCTCTTCAACTCTTCAAATTCTTGGTGCGGAGAAGGCTTTGTTCAG GGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTCEST: gi|193487050|gb|FK448853.1|FK448853
genomic: TGCCCCTCTTCAACTCTTCAAATTCTTGGTGCGGAGAAGGCTTTGTTCAGgtttttactc ... ctttatttagGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTC
EST: TTGGTGCGGAGAAGGCTTTGTTCAG GGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTCEST: gi|193430229|gb|FK397249.1|FK397249
genomic: TTGGTGCGGAGAAGGCTTTGTTCAGgtttttactc ... ctttatttagGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTC
EST: GAAGGCTTTGTTCAG GGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATAATTCCACTEST: gi|193449446|gb|FK415109.1|FK415109
genomic: GAAGGCTTTGTTCAGgtttttactc ... ctttatttagGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGAT-ATTCCACT
EST: TGCCCCTCTTCAACTCTTCAAATTCTTGGTGCGGAGAAGGCTTTGTTCAG GGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATEST: gi|21639183|gb|BM140229.1|BM140229
genomic: TGCCCCTCTTCAACTCTTCAAATTCTTGGTGCGGAGAAGGCTTTGTTCAGgtttttactc ... ctttatttagGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGAT
EST: TGCCCCTCTTCAACTCTTCAAATTCTTGGTGCGGAGAAGGCTTTGTTCAG GGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTCEST: gi|208289353|gb|GE085800.1|GE085800
genomic: TGCCCCTCTTCAACTCTTCAAATTCTTGGTGCGGAGAAGGCTTTGTTCAGgtttttactc ... ctttatttagGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTC
EST: ATTCTTGGTGCGGAGAAGGCTTTGTTCAG GGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTCEST: gi|208300964|gb|GE098503.1|GE098503
genomic: ATTCTTGGTGCGGAGAAGGCTTTGTTCAGgtttttactc ... ctttatttagGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTC
EST: TGCCCCTCTTCAACTCTTCAAATTCTTGGTGCGGAGAAGGCTTTGCTCAG GGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTCEST: gi|151403792|gb|EV273602.1|EV273602
genomic: TGCCCCTCTTCAACTCTTCAAATTCTTGGTGCGGAGAAGGCTTTGTTCAGgtttttactc ... ctttatttagGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTC
EST: TGCCCCTCTTCAACTCTTCAAATTCTTGGTGCGGAGAAGGCTTTGTTCAG GGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTCEST: gi|7587859|gb|AW703666.1|AW703666
genomic: TGCCCCTCTTCAACTCTTCAAATTCTTGGTGCGGAGAAGGCTTTGTTCAGgtttttactc ... ctttatttagGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTC
EST: TGCCCCTCTTCAACTCTTCAAATTCTTGGTGCGGAGAAGGCTTTGTTCAG GGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTC
genomic: TGCCCCTCTTCAACTCTTCAAATTCTTGGTGCGGAGAAGGCTTTGTTCAGgtttttactc ... ctttatttagGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTC
actattccttgtgcactcactgctattttataatgtctttgcctgctttatttagGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGCAGAATGGCTCGA
cactcac putative branch site (score: 2)
tctttgcctgcttt putative PPT
tattttataatgtctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtttaggttgttttgtctggacctcagctaaaatacagacattactattccttgtgcactcactgctattttataatgtctttgcctgctttatttagGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGCAGAATGGCTCGA
- - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttgcc