1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcatacatcttaaaagagaaacacatttgggattctttggtcatgactataactttgcatataatctttataatctcgacaacaacttttctgttgatgcagAGGCTGTTCAACGTGCTGCTACTATTGCAGAAGCAGAGGGTGCTAGTCAAATAGAACCTACTCATTTGGAGATTATTCTCCCTCAGTTACTTTTAGATTT
species | Glycine max |
transcript | GLYMA05G02820.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCCAATGCTCTGAAGCTTACTTCTGAACTTCTCCGGATTTTTATCACAG AGGCTGTTCAACGTGCTGCTACTATTGCAGAAGCAGAGGGTGCTAGTCAAAEST: gi|9259444|gb|BE347591.1|BE347591
genomic: TGCCAATGCTCTGAAGCTTACTTCTGAACTTCTCCGGATTTTTATCACAGgttcatacat ... gttgatgcagAGGCTGTTCAACGTGCTGCTACTATTGCAGAAGCAGAGGGTGCTAGTCAAA
EST: TGCCAATGCTCTGAAGCTTACTTCTGAACTTCTCCGGATTTTTATCACAG AGGCTGTTCAACGTGCTGCTACTATTGCAGAAGCAGAGGGTGCTAGTCAAAEST: gi|15000616|gb|BI321430.1|BI321430
genomic: TGCCAATGCTCTGAAGCTTACTTCTGAACTTCTCCGGATTTTTATCACAGgttcatacat ... gttgatgcagAGGCTGTTCAACGTGCTGCTACTATTGCAGAAGCAGAGGGTGCTAGTCAAA
EST: TGCCAATGCTCTGAAGCTTACTTCTGAACTTCTCCGGATTTTTATCACAG AGGCTGTTCAACGTGCTGCTACTATTGCAGAAGCAGAGGGTGCTAGTCAAAEST: gi|208318606|gb|GE112879.1|GE112879
genomic: TGCCAATGCTCTGAAGCTTACTTCTGAACTTCTCCGGATTTTTATCACAGgttcatacat ... gttgatgcagAGGCTGTTCAACGTGCTGCTACTATTGCAGAAGCAGAGGGTGCTAGTCAAA
EST: TGCCAATGCTCTGAAGCTTACTTCTGAACTTCTCCGGATTTTTATCACAG AGGCTGTTCAACGTGCTGCTACTATTGCAGAAGCAGAGGGTGCTAGTCAAAEST: gi|10844894|gb|BF068090.1|BF068090
genomic: TGCCAATGCTCTGAAGCTTACTTCTGAACTTCTCCGGATTTTTATCACAGgttcatacat ... gttgatgcagAGGCTGTTCAACGTGCTGCTACTATTGCAGAAGCAGAGGGTGCTAGTCAAA
EST: TGCCAATGCTCTGAAGCTTACTTCTGAACTTCTCCGGATTTTTATCACAG AGGCTGCTCAACGTGCTGCTACTATTGCAGAAGCAGAGGGTGCTAGTCAAA
genomic: TGCCAATGCTCTGAAGCTTACTTCTGAACTTCTCCGGATTTTTATCACAGgttcatacat ... gttgatgcagAGGCTGTTCAACGTGCTGCTACTATTGCAGAAGCAGAGGGTGCTAGTCAAA
tataactttgcatataatctttataatctcgacaacaacttttctgttgatgcagAGGCTGTTCAACGTGCTGCTACTATTGCAGAAGCAGAGGGTGCTAGTCAAATAGAACCTACTCATTTGGAGATTATTCTCCCTCAGTTACTTTTAGATTT
cttttctgtt CT-rich tract
tttgcatataatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcatacatcttaaaagagaaacacatttgggattctttggtcatgactataactttgcatataatctttataatctcgacaacaacttttctgttgatgcagAGGCTGTTCAACGTGCTGCTACTATTGCAGAAGCAGAGGGTGCTAGTCAAATAGAACCTACTCATTTGGAGATTATTCTCCCTCAGTTACTTTTAGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT