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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcatattttcattttacaacatatttaattcaagtgaaatagcttaatgttgtccgtatctttttatatattattgctacggcgatgttcttttgcagGTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTG

Basic information

species Glycine max
transcript GLYMA04G43520.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20812843|gb|BQ297321.1|BQ297321
EST:     GGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACA                         GTTTCCTTTCATCATTGATCAAAAAAGTGGTAT
genomic: GGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACAgtatgtagtt ... tcttttgcagGTTTCCTTTCATCATTGATCAAAAAAGTGGTAT
EST: gi|10231867|gb|BE800755.1|BE800755
EST:     GGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGGAAAGAACA                         GNTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTG
genomic: GGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACAgtatgtagtt ... tcttttgcagGTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTG
EST: gi|298192682|gb|HO033116.1|HO033116
EST:     GGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACA                         GTTTCCTTTCATCATTGATCAAAAAAGTGG
genomic: GGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACAgtatgtagtt ... tcttttgcagGTTTCCTTTCATCATTGATCAAAAAAGTGG
EST: gi|9903056|gb|BE612024.1|BE612024
EST:     GTTCTGTAAGACACAGAGAGGTGGTCAGAAAAAACTGGTGGGAAAGAACA                         GTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTG
genomic: GTTCTGTAAGACACAGAGAGGTGGTCAG-AAGAACTGGTGGCAAAGAACAgtatgtagtt ... tcttttgcagGTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatgttgtccgtatctttttatatattattgctacggcgatgttcttttgcagGTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTG
 gcttaat  putative branch site (score: 4)
                                          tgttctttt  putative PPT
             tatctttttatatatt  TA-rich tract