1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgcatattttcattttacaacatatttaattcaagtgaaatagcttaatgttgtccgtatctttttatatattattgctacggcgatgttcttttgcagGTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTG
species | Glycine max |
transcript | GLYMA04G43520.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACA GTTTCCTTTCATCATTGATCAAAAAAGTGGTATEST: gi|10231867|gb|BE800755.1|BE800755
genomic: GGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACAgtatgtagtt ... tcttttgcagGTTTCCTTTCATCATTGATCAAAAAAGTGGTAT
EST: GGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGGAAAGAACA GNTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTGEST: gi|298192682|gb|HO033116.1|HO033116
genomic: GGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACAgtatgtagtt ... tcttttgcagGTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTG
EST: GGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACA GTTTCCTTTCATCATTGATCAAAAAAGTGGEST: gi|9903056|gb|BE612024.1|BE612024
genomic: GGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACAgtatgtagtt ... tcttttgcagGTTTCCTTTCATCATTGATCAAAAAAGTGG
EST: GTTCTGTAAGACACAGAGAGGTGGTCAGAAAAAACTGGTGGGAAAGAACA GTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTG
genomic: GTTCTGTAAGACACAGAGAGGTGGTCAG-AAGAACTGGTGGCAAAGAACAgtatgtagtt ... tcttttgcagGTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTG
ttaatgttgtccgtatctttttatatattattgctacggcgatgttcttttgcagGTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTG
gcttaat putative branch site (score: 4)
tgttctttt putative PPT
tatctttttatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcatattttcattttacaacatatttaattcaagtgaaatagcttaatgttgtccgtatctttttatatattattgctacggcgatgttcttttgcagGTTTCCTTTCATCATTGATCAAAAAAGTGGTATTTTTATATATGAAAGTG
-tgcatat
- - - - - - - - - - - - - - - - caagtga
- - - - - - - - - - - - - - - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctacgg