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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatctataaattggattttgtgctctacatttatcttactctttctgtgatttcattgtcttttttaattaatggaacattagttatatttggatatagttatagtctcattggggttttcattctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG

Basic information

species Glycine max
transcript GLYMA04G43390.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207735715|gb|GD713050.1|GD713050
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|193614874|gb|FK562856.1|FK562856
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|193682413|gb|FK624617.1|FK624617
EST:     CGAGGCTTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCGTCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: CGAGGC-TTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|208060289|gb|GD859963.1|GD859963
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATT
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATT
EST: gi|14012147|gb|BG727069.1|BG727069
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|193681609|gb|FK623331.1|FK623331
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|193393375|gb|FK359367.1|FK359367
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAG-TGGTCTCTTGTT
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTT
EST: gi|193439674|gb|FK405877.1|FK405877
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTT
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTT
EST: gi|31561978|gb|CD487816.1|CD487816
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|254326214|gb|GR840806.1|GR840806
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|193398710|gb|FK362490.1|FK362490
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTG
EST: gi|298187350|gb|HO034499.1|HO034499
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|120533661|gb|EH261794.1|EH261794
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagttatatttggatatagttatagtctcattggggttttcattctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG
                                      ttttcattct  CT-rich tract
     ttatatttggatatag  TA-rich tract