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...ttaattaatatgtatattatcccatctgaaagatgaagtgtatatatgagttgctatggtaacaaaattaacatgggtgatattgtcattgtcatcacagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA
species | Glycine max |
transcript | GLYMA04G43340.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG TGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCAEST: gi|213615386|gb|DB965651.1|DB965651
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA
EST: CAATTGGAACGGGAGAAGGGGATTGTTATCAGATTCATGATTGGTCACAG TGCAACTTCCAACAGCATEST: gi|23052841|gb|BU577332.1|BU577332
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAGCAT
EST: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG TGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCAEST: gi|151395197|gb|EV265068.1|EV265068
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA
EST: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG TGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCAEST: gi|31561426|gb|CD487264.1|CD487264
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA
EST: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG TGCAACTTCCAACAGEST: gi|209720190|gb|BW674528.1|BW674528
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAG
EST: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG TGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCEST: gi|16104724|gb|BI892464.1|BI892464
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTC
EST: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG TGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCAEST: gi|192305500|gb|FG994294.1|FG994294
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA
EST: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG TGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA
atgagttgctatggtaacaaaattaacatgggtgatattgtcattgtcatcacagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA
aattaac putative branch site (score: 2)
taacaaaattaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaattaatatgtatattatcccatctgaaagatgaagtgtatatatgagttgctatggtaacaaaattaacatgggtgatattgtcattgtcatcacagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA