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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactactattgcctaagctaagcctttttgttttcccaattacttgctattaccttaacctctttcagactcattcttatgttaatatgtatttgcagGTAGCAGCTAGACGAATAATTGCTGGCAAGTGGGGATTGAACAATGGACAAGCCTGCATTTCTCCCGATTATGTTATAACAACAAAAGACTATGCTCCCA

Basic information

species Glycine max
transcript GLYMA04G42740.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G42740.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0001g02440.t01 (Vitis vinifera), 3'ss of exon 7
------------------------gtactactattgcctaagcta---agcctttttgttttccca---attacttgctattaccttaacctctttcagactcatt--cttat---gttaatatgtatttgca-gGTAGCAGCTAGACGAATAATTGCTGGCAAGTGGGGATTGAACAATGGACAAGCCTGCATTTCTCCCGATTATGTTATAACAACAAAAGACTATGCTCCCA
                         ||||  |  |||    |  |   | || | ||| |  |      || |   ||||   | ||  ||||| |  | || ||   || |    |||  | ||| ||| || ||| |||  ||| || |||   |  |||||||||| |   || |||||||||||||||||| |||| |||||| || | ||||||||||||| |||||| |
gtaaagaacctttcttagtcttgcatacttatggtgctatggtcatttaaccctgttgctacctgtggcataatgggctacc-cttttgcctctgtatggcttatgtgctgacatagtttttttgtgtttccaagGTTGCAATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAAGCCTGCATTGCTCCTGATTATATTGTCACAACAAAAGACTTTGCTCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308517|gb|FK002413.1|FK002413
EST:     AGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCAAACAACAATTTGCTG                         GTAGCAGCTAGACGAATAATTGCTGGCAAGTGGGGATTGAACAATGGACAA
genomic: AGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCAAACAACAATTTGCTGgtactactat ... gtatttgcagGTAGCAGCTAGACGAATAATTGCTGGCAAGTGGGGATTGAACAATGGACAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctattaccttaacctctttcagactcattcttatgttaatatgtatttgcagGTAGCAGCTAGACGAATAATTGCTGGCAAGTGGGGATTGAACAATGGACAAGCCTGCATTTCTCCCGATTATGTTATAACAACAAAAGACTATGCTCCCA
                                    tgttaat  putative branch site (score: 3)
                             attcttatgttaatat  TA-rich tract