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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcactttgcaattttaacttacaatggtacatagtttcatatttattattggcagtgcagtggcatagacaataaaatgttacatagtttcatagtttcatattcatgtatggtttttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATATTTCATATACCGAGACAATAAAGGCGTTACAGGGAAACAAGCCCCAACAG

Basic information

species Glycine max
transcript GLYMA04G42040.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208336154|gb|GE134253.1|GE134253
EST:     GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA                         GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
genomic: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggtttttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
EST: gi|16345749|gb|BI971344.1|BI971344
EST:     GCACGTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA                         GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTATAT
genomic: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggtttttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
EST: gi|208279476|gb|GE073655.1|GE073655
EST:     CCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA                         GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
genomic: CCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggtttttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
EST: gi|208322785|gb|GE123008.1|GE123008
EST:     GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA                         GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
genomic: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggtttttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
EST: gi|192305145|gb|FG994695.1|FG994695
EST:     TTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA                         GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
genomic: TTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggtttttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
EST: gi|192305144|gb|FG994694.1|FG994694
EST:     GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA                         GTACCTAATGGTGTGGGT-CTGCTTTGGGGACA-CGCA-CTAATATTATAT
genomic: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggtttttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacaataaaatgttacatagtttcatagtttcatattcatgtatggtttttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATATTTCATATACCGAGACAATAAAGGCGTTACAGGGAAACAAGCCCCAACAG
                                               tttttc  CT-rich tract
     ataaaatgttacata  TA-rich tract