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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttgcatgttgttagtatgttttgaattttgattttgttgttgagcatatttttaccaagttatctgacattctgtatatatacctccatctattgcagTTCTCTTGGTCAGAACCTTGCAACAAGTACCTATGTTTGGGAAATCTGCTTTGCAATTTTCATTTCAATTGCTGGTTTGGTGTTATTTGCATTCCTCATT

Basic information

species Glycine max
transcript GLYMA04G41610.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41610.2 (Glycine max), 3'ss of exon 5
lower sequence: AT5G53130.1 (Arabidopsis thaliana), 3'ss of exon 5
--agttgcatgttgttagtatgttttgaattttgattttgttgttgagcatatttttaccaagttatctgacattctgtatatatacctccatctattgcagTTCTCTTGGTCAGAACCTTGCAACAAGTACCTATGTTTGGGAAATCTGCTTTGCAATTTTCATTTCAATTGCTGGTTTGGTGTTATTTGCATTCCTCATT
  | |   |  || | || |   |||    | |   ||| || |  || | | ||| | ||     |       ||| | | | |   | | |    | |||||| || ||||||||||||  ||||||||| ||| ||||||||||||| || ||  | |||||||| ||||| ||  |||| || ||  | ||| | |||
gtattgagaatttatcagcaaaattt----tctccgtttcttatgaagaaaagtttcaacactaagttcttgcatctttgt-tctgttttcgt--gatccagTTCGCTCGGTCAGAACCTTAAAACAAGTACATATATTTGGGAAATCTGTTTCGCGGTGTTCATTTCTATTGCGGGGCTGGTTTTGTTCTCCTTCTTGATT

upper sequence: GLYMA04G41610.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0050g02560.t01 (Vitis vinifera), 3'ss of exon 5
-agttgcatgttgttagtatgttttgaattttgattttgttg--ttgagcat-atttttaccaagttatctgacattctgtatatatacctccatctattgcagTTCTCTTGGTCAGAACCTTGCAACAAGTACCTATGTTTGGGAAATCTGCTTTGCAATTTTCATTTCAATTGCTGGTTTGGTGTTATTTGCATTCCTCATT
    |   |  || ||  |||  |  | ||||| |||| ||   |||||||| |||| |    | |  | ||  ||| | ||  |     | ||| | |||||||||||||||||| |||||   |||||| |||||||| |||||||| ||||||||| | |||||||| ||  |||| ||||| |||||| |||| || |||
tctctttgtaatgataa-atgcatacacttttggttttcttactttgagcatcatttgtgtttattattgtggtattttatacttgg---tacattttttgcagTTCTCTTGGTCAAAACCTCAAAACAAGCACCTATGTCTGGGAAATTTGCTTTGCAGTGTTCATTTCCATCTCTGGCTTGGTTTTATTTTCATTTCTTATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatatttttaccaagttatctgacattctgtatatatacctccatctattgcagTTCTCTTGGTCAGAACCTTGCAACAAGTACCTATGTTTGGGAAATCTGCTTTGCAATTTTCATTTCAATTGCTGGTTTGGTGTTATTTGCATTCCTCATT
                  atctgac  putative branch site (score: 3)
                                       cctccatct  putative PPT
                         attctgtatatata  TA-rich tract