1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caaactgacccttaattttcatctctgacatggggattccttgagcattattttcattttctctttttatacgagggagaatctaatataattgtggcagGTAACAACTGAATTTGAAGAAAGTTGGGCTGTTGGAAAGGTACAGGGATGGGAAAATGACAATCAGGAAAATGGACATGTACTTGCTGAGCATGCTACCA
species | Glycine max |
transcript | GLYMA04G41530.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTTCCAGCGTACAGAGCCCCTGCAAGATCTTGATCGAATTTTGTCAAAG GTAACAACTGAATTTGAAGAAAGTTGGGCTGTTGEST: gi|193325953|gb|FK292254.1|FK292254
genomic: TTTTCCAGCGTACAGAGCCCCTGCAAGATCTTGATCGAATTTTGTCAAAGgtgattaata ... attgtggcagGTAACAACTGAATTTGAAGAAAGTTGGGCTGTTG
EST: TTTTCCAGCGTACAGAGCCCCTGCAAGATCTTGATCGAATTTTGTCAAAG GTAACAACTGAATTTGAAGAAAGTTGGGCTGTTGGAGAGGTACAGGGATGGEST: gi|208030607|gb|GD828463.1|GD828463
genomic: TTTTCCAGCGTACAGAGCCCCTGCAAGATCTTGATCGAATTTTGTCAAAGgtgattaata ... attgtggcagGTAACAACTGAATTTGAAGAAAGTTGGGCTGTTGGAAAGGTACAGGGATGG
EST: TTTTCCAGCGTACAGAGCCCCTGCAAGATCTTGATCGAATTTTGTCAAAG GTAACAACTGAATTTGAAGAAAGTTGGGCTGTTGGAAAGGTACAGGGATGGEST: gi|193426610|gb|FK391261.1|FK391261
genomic: TTTTCCAGCGTACAGAGCCCCTGCAAGATCTTGATCGAATTTTGTCAAAGgtgattaata ... attgtggcagGTAACAACTGAATTTGAAGAAAGTTGGGCTGTTGGAAAGGTACAGGGATGG
EST: TTTTCCAGCGTACAGAGCCCCTGCAAGATCTTGATCGAATTTTGTCAAAG GTA-CAACTGAAEST: gi|193564745|gb|FK517158.1|FK517158
genomic: TTTTCCAGCGTACAGAGCCCCTGCAAGATCTTGATCGAATTTTGTCAAAGgtgattaata ... attgtggcagGTAACAACTGAA
EST: TTTTCCAGCGTACAGAGCCCCTGCAAGATCTTGATCGAATTTTGTCAAAG GTAACAACTGAATTTGAAGAAAGTTGGGCTGTTGGAAAGGTACAGGGATGGEST: gi|193725639|gb|FK660647.1|FK660647
genomic: TTTTCCAGCGTACAGAGCCCCTGCAAGATCTTGATCGAATTTTGTCAAAGgtgattaata ... attgtggcagGTAACAACTGAATTTGAAGAAAGTTGGGCTGTTGGAAAGGTACAGGGATGG
EST: TTTCCTAGCGTACAGAGCCCCTGCAAGATCTTGATCGAATTTTGTCAAAG GTAACAACTGAATTTGAAGAAAGTTGGGCTGTTGGAAAGGTACAGGGATGG
genomic: TTTCC-AGCGTACAGAGCCCCTGCAAGATCTTGATCGAATTTTGTCAAAGgtgattaata ... attgtggcagGTAACAACTGAATTTGAAGAAAGTTGGGCTGTTGGAAAGGTACAGGGATGG
cattattttcattttctctttttatacgagggagaatctaatataattgtggcagGTAACAACTGAATTTGAAGAAAGTTGGGCTGTTGGAAAGGTACAGGGATGGGAAAATGACAATCAGGAAAATGGACATGTACTTGCTGAGCATGCTACCA
atctaat putative branch site (score: 3)
ttttcattttctcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaactgacccttaattttcatctctgacatggggattccttgagcattattttcattttctctttttatacgagggagaatctaatataattgtggcagGTAACAACTGAATTTGAAGAAAGTTGGGCTGTTGGAAAGGTACAGGGATGGGAAAATGACAATCAGGAAAATGGACATGTACTTGCTGAGCATGCTACCA
- - ctgaccc
- - - - - - - - - - - - -tgacatg
- - - - - - - - - - - - - - - - - - ttccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagggag