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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaattttaaaatctgaatccattccattgtcttaccaactctagaaattaaagggtctttcaaggttttcttttctcagaatcaagttttgagccgttactttttggtaccacgaactcatgtttcacttgtttatgttaatgacttgtgatatcatttacacattcagTGGATTTGCCACGATTGGAGTGATGATCACTGCTTGAAGTTCTTGAAGAACTGCTATGAGGCACTACCAGATAATGGGAAAGTGATTGTGGCGGAATGCA

Basic information

species Glycine max
transcript GLYMA04G40590.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G40590.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G54160.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgaattttaaaatctgaatccattccattgtcttaccaactctagaaattaaagggtctttcaaggttttcttttctcagaatcaagttttgagccgttactttttggtaccacgaactcatgtttcacttgtttatgttaatgacttgtgatatcatttacacattcagTGGATTTGCCACGATTGGAGTGATGATCACTGCTTGAAGTTCTTGAAGAACTGCTATGAGGCACTACCAGATAATGGGAAAGTGATTGTGGCGGAATGCA
                                           ||| ||||||        |||||  | | ||    || | |||||  |      |  | || |||  |  |      | |  ||||       ||||   | |    |  | |||||     |  |||||||| || || || |||||||| || || ||| |||| ||||||||||||||||| ||| |||| |||||  |||| ||||||||  | || || || |
-----------------------------------------gttagtaattaa--------tcaag--tattttacaccaaattcaagactaattaagaaaattcttgacattata----cgtaattcatcaaggaatgtatctcaaacattttctcattgttgtaa-cagTGGATATGTCATGACTGGAGTGACGAACATTGCGTGAAATTCTTGAAGAACTGCTACGAGTCACTTCCAGAGGATGGAAAAGTGATATTAGCAGAGTGTA

upper sequence: GLYMA04G40590.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0098g00850.t01 (Vitis vinifera), 3'ss of exon 3
gtgaattttaaaatctgaatccattccattgtcttaccaactctagaaattaaagggtctttcaaggttttcttttctcagaatcaagttttgagccgttactttttggtaccacgaactcatgtttcacttgtttatgttaatgacttgtgatatcatttaca--cattcagTGGATTTGCCACGATTGGAGTGATGATCACTGCTTGAAGTTCTTGAAGAACTGCTATGAGGCACTACCAGATAATGGGAAAGTGATTGTGGCGGAATGCA
                                                                             ||| ||| ||  |  ||   | |  | |  | || || ||  |  | | |    |   |    | |||      ||| | | ||     | | |||||||| ||||| ||||||||||||| ||| ||||||||||||||||||||||| ||| ||||||| ||||| |||||||| || ||||| || |||||||
-------------------------------------------------------------------------cccgtcaaaatgaacataagatgaggtcatatgagatagcaagatgtggtatattttgtaccttcaattatgctaatggatgtaaattgtcttcctgcagTGGATATGCCATGATTGGAGTGATGCTCATTGCTTGAAGTTCTTGAAGAACTGTTATCAGGCACTTCCAGACAATGGGAAGGTAATTGTTGCTGAATGCA

upper sequence: GLYMA04G40590.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0098g00850.t01 (Vitis vinifera), 3'ss of exon 8
gtgaattttaaaatctgaatccattccattgtcttaccaactctagaaattaaagggtctttcaaggttttcttttctcagaatcaagttttgagccgttactttttggtaccacgaactcatgtttcacttgtttatgttaatgacttgtgatatcatttacacattcagTGGATTTGCCACGATTGGAGTGATGATCACTGCTTGAAGTTCTTGAAGAACTGCTATGAGGCACTACCAGATAATGGGAAAGTGATTGTGGCGGAATGCA
                                                          |  ||||  |   | |       | |||  |   |||     |   | |||||     |  |  |   |   |   ||||| |||||  | || | ||  | | |     |||||||| ||| | || |||  ||||| ||| ||||||||||||||| |||| || ||| ||||||| ||||| ||||| || || ||||| || || ||||
---------------------------------------------------------cccgtcaaactgaacataagatgaagtcacat---gagatagcaagatgtggtat----attttgtacct---tcaattatgctaatggat-gtaa-attgtcttcctg--cagTGGATGTGCTATGAGTGGGATGATGCTCATTGCTTGAAGTTCTTGGAGAATTGTTATCAGGCACTTCCAGACAATGGAAAGGTAATTGTTGCTGAGTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactcatgtttcacttgtttatgttaatgacttgtgatatcatttacacattcagTGGATTTGCCACGATTGGAGTGATGATCACTGCTTGAAGTTCTTGAAGAACTGCTATGAGGCACTACCAGATAATGGGAAAGTGATTGTGGCGGAATGCA
                     tgttaat  putative branch site (score: 3)
              ttgtttatgttaat  TA-rich tract