Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattttgaacttggcgatccattagtgactgcgtggttttggaaataaattggcaataagaaaaggaaacacagaacacaatttcttacattcgtagatgcacatcagttgtcaaaataatttctgatgtatgcttgtttttcttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAATTGGAAATATGCCAGTGAAGTGTATGAGAAAGAGAGCTCTTAGTCTGAAA

Basic information

species Glycine max
transcript GLYMA04G39930.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39930.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os05g25850.1 (Oryza sativa), 3'ss of exon 5
gtaaaattttgaacttggcgatccattagtgactgcgtggttttggaaataaattggcaa-taagaaaaggaaacacagaacacaatttcttacattcgtagatgcacatcagttgtcaaaataatttctgatgtatgcttgtttttcttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAATTGGAAATATGCCAGTGAAGTGTATGAGAAAGAGAGCTCTTAGTCTGAAA
                                                     ||  ||| | | || |     ||||   | ||| || ||   | | | ||    || |  |||  |   |  |      | |    |  |||   |  ||||||||||||||||| || |||||||| ||||  ||||| ||||| || || || |||||||| ||  | || ||||| || || | ||   |||  | |    
---------------------------------------------------gtttaacaacttacaacatcgtgcaca---cccaacttatt-tgtgcttcgaatttcaacctttgctat--tgctaaacagtcttcattgatttccgtggttgcagTACAAGAATGTCAGGCCAGACTACCTGAGCAACATCTGGAAGGTGATGAACTGGAAATACGCAGGGGAGGTGTACGAAAATGCGACTGCTTGATGTTGTC

upper sequence: GLYMA04G39930.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G124455_T02 (Zea mays), 3'ss of exon 5
gtaaaattttgaacttggcgatccattagtgactgcgtggttttggaaataaattggcaataagaaaaggaaacacagaacacaatttcttacattcgtagatgcacatcagttgt-caaaataatttctgatgtatgcttgtttttcttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAATTGGAAATATGCCAGTGAAGTGTATGAGAAAGAGAGCTCTTAGTCTGAAA
                                                   | ||| |    |  |   |   ||          |   | |   | | ||   |   |  || || | || |  | ||           || |||  |  |||||||||||||||||||| || || || ||||| ||||| ||||| || || || |||||||||||  | || ||||| || || |      |||    ||   
---------------------------------------------------atttgtctcccaatatcagtgtca-gttttgtcgtgagtcaatcttgaagtgacctttttgtcgtgctaagtggtctcctccac-----tgctttcttggttgcagTACAAGAATGTTAGGCCGGATTACCTGAACAACATCTGGAAGGTGATGAACTGGAAATATGCTGGAGAGGTGTACGAAAATGTTCTTGCTTGAATTGTCT

upper sequence: GLYMA04G39930.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G032676_T01 (Zea mays), 3'ss of exon 2
gtaaaattttgaacttggcgatccattagtgactgcgtggttttggaaataaattggcaataagaaaaggaaacacagaacacaatttcttacattcgtagatgcacatcagttgtcaaaataatttctgatgtatgcttgtttttcttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAATTGGAAATATGCCAGTGAAGTGTATGAGAAAGAGAGCTCTTAGTCTGAAA
                                               |||  ||| ||  |   || |  |     ||        || |  | |  ||| ||    |  ||   |     |  |      || ||   || |||  |  |||||||||||||||||||| || || || ||||| ||||| ||||| || || || |||||||||||  | || ||||| || || |      |||    ||   
-----------------------------------------------aatttatttgccctcccaatatcagtgttag--------ttttgtcgtgagtaaatcttgaagagactttgttgtcgtgctaagtg-atcactgctttcttggttgcagTACAAGAATGTTAGGCCGGATTACCTGAACAACATCTGGAAGGTGATGAACTGGAAATATGCTGGAGAGGTGTACGAAAATGTTCTTGCTTGAATTGTCT

upper sequence: GLYMA04G39930.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G059991_T01 (Zea mays), 3'ss of exon 5
gtaaaattttgaacttggcgatccattagtgactgcgtggttttggaaataaattggcaataagaaaaggaaacacagaacacaatttcttacattcgtagatgcacatcagttgtcaaaataatttctgatgtatgcttgtttttcttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAATTGGAAATATGCCAGTGAAGTGTATGAGAAAGAGAGCTCTTAGTCTGAAA
                                               |||  ||| ||  |   || |  |    || |        |    || || |  |   || |  ||||||    ||| | || |        || |||  |  |||||||||||||||||||| || || || ||||| ||||| ||||| || || || |||||||||||  | || ||||| || || |      |||    ||   
-----------------------------------------------aatttatttgccctcccaatatcagtgtca-attttgtcgtgagtcaatcttgaagagacttt-gttgtcgtgctaagtgctcac-------tgctttcttggttgcagTACAAGAATGTTAGGCCGGATTACCTGAACAACATCTGGAAGGTGATGAACTGGAAATATGCTGGAGAGGTGTACGAAAATGTTCTTGCTTGAATTGTCT

upper sequence: GLYMA04G39930.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g07950.t01 (Vitis vinifera), 3'ss of exon 5
gtaaaattttgaacttggcgatccattagtgactgcgtggttttggaaataaattggcaataagaaaaggaaacacagaacacaatttcttacattcgtagatgcacatcagttgtcaaaataatttctgatgt---atgcttgtttttcttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAATTGGAAATATGCCAGTGAAGTGTATGAGAAAGAGAGCTCTTAGTCTGAAA
                 | |||   |    || |      ||||||| |||         | | |||        |||||   | ||  ||| |  | ||| | |       || |   || || |    || |   ||| | ||   |  |  |||||||||| ||||| | | | ||||| ||||||||||| ||||| ||||| || ||||||||||| |||||  ||||||||||||||||  | |         
-----------------gtgatttttccaggaatttaatattttggatata---------tgaaaaagtctgcttcagaattgagttctttatagacttagtttcttc----ttctgggaaaaactcggaatttgaaatgatcgtccctggtgatgcagTACAAAAATGTAAAAGCTGACTACCTGAAGAACATATGGAAGGTTATGAACTGGAAATATGCAAGTGAGTTGTATGAGAAAGAGAGTGCCTGAGG-----

upper sequence: GLYMA04G39930.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0067g02990.t01 (Vitis vinifera), 3'ss of exon 5
gtaaaattttgaacttggcgatccattagtgactgcgtggttttggaaataaattggcaataagaaaaggaaacacagaacacaatttcttacattcgtagatgcacatcagttgtcaaaataatttctgatgtatgcttgtttttcttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAATTGGAAATATGCCAGTGAAGTGTATGAGAAAGAGAGCTCTTAGTCTGAAA
                                                  |||||  |||| | | |||   |  |   ||  |      ||  | |  |  | |       || ||||  | |||||   ||| |   | |||  | | |  |||||||||||||| || || || || ||||||||| | |||||||| ||  | ||||||||||||||||||||||||||||||||| || |||   |   | 
-------------------------------------------------caaattttcaattacataag---attcgttaccta----tataggtcctgatttcccttgtgtttctcaatctgatttcatgtgtttcaatctttcccatgtgacagTACAAGAATGTGAGGCCGGATTACCTGAAGAACGTATGGAAAGTGATAGACTGGAAATATGCCAGTGAAGTGTATGAGAAAGAGTGCCCTTGAACAACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15202905|gb|BI425673.1|BI425673
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGC-TACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|254348035|gb|GR854284.1|GR854284
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|209701874|gb|BW670515.1|BW670515
EST:     TGGTTCCATTGCTTGGTATTGATGTTCGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|213596112|gb|DB977474.1|DB977474
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|16277187|gb|BI942249.1|BI942249
EST:     GGTTCCATTGCTTGGGTAT-GATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGAC
genomic: GGTTCCATTGCTTGG-TATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGAC
EST: gi|16279538|gb|BI943488.1|BI943488
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGGTATT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATT
EST: gi|26043898|gb|CA782221.1|CA782221
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|254327280|gb|GR836889.1|GR836889
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|120494709|gb|EH222876.1|EH222876
EST:     GGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: GGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|254348034|gb|GR854283.1|GR854283
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|23057548|gb|BU578222.1|BU578222
EST:     TGGTTCCATTGATTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTTAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|120534042|gb|EH262175.1|EH262175
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|15337326|gb|BI497982.1|BI497982
EST:     TTCCATTGCTTGGTATTGATGTTTGGGAGCATGCATACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|120493928|gb|EH222095.1|EH222095
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|15589581|gb|BI674197.1|BI674197
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|151407123|gb|EV276938.1|EV276938
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|6848899|gb|AW351189.1|AW351189
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|16281250|gb|BI944390.1|BI944390
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|192323227|gb|FK017048.1|FK017048
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|14991332|gb|BI317005.1|BI317005
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCACACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|193708543|gb|FK648505.1|FK648505
EST:     TGGTTCCATTGATTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTTAAGAACATT-GGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|31475896|gb|CD417924.1|CD417924
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCCGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|192310848|gb|FK001552.1|FK001552
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATTTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|214008806|gb|DB986815.1|DB986815
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|120494757|gb|EH222924.1|EH222924
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|16283905|gb|BI945803.1|BI945803
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|17020713|gb|BM091747.1|BM091747
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|315113945|gb|HS411884.1|HS411884
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|207737588|gb|GD715590.1|GD715590
EST:     TGGTTCCATTGATTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAAGACC
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTA-GACC
EST: gi|214007882|gb|DB987812.1|DB987812
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTAACTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|31466096|gb|CD408124.1|CD408124
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|120532552|gb|EH260685.1|EH260685
EST:     TGGTTCCATTGCTTGGTATTGATGTATGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGCAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|58015757|gb|CX702499.1|CX702499
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|16276933|gb|BI942117.1|BI942117
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|16284486|gb|BI946115.1|BI946115
EST:     -GGTTCCATTGCTTGGTAATGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGT-ATTA
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTA
EST: gi|254327281|gb|GR836890.1|GR836890
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|23059161|gb|BU578358.1|BU578358
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
EST: gi|120495097|gb|EH223264.1|EH223264
EST:     TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAG                         TACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT
genomic: TGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGgtaaaatttt ... cttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcacatcagttgtcaaaataatttctgatgtatgcttgtttttcttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAATTGGAAATATGCCAGTGAAGTGTATGAGAAAGAGAGCTCTTAGTCTGAAA
                        ttctgat  putative branch site (score: 3)
                                    cttgtttttcttatt  putative PPT
           ttgtcaaaataattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaattttgaacttggcgatccattagtgactgcgtggttttggaaataaattggcaataagaaaaggaaacacagaacacaatttcttacattcgtagatgcacatcagttgtcaaaataatttctgatgtatgcttgtttttcttattgcagTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAATTGGAAATATGCCAGTGAAGTGTATGAGAAAGAGAGCTCTTAGTCTGAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT