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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcctctttcatgtgataatatctgtataaaacagttatgggaataacaaaatctttagatttttttgttctccccttaacattgttatagGTATTCTGAATTGATTAGTCATGCTCCAGAAGGGGAATATTCAAAGATGGCTCCGTTTCGCATTTTGAGTTTTGACATCGAGTGTGCTGGTCGTAAAGGT

Basic information

species Glycine max
transcript GLYMA04G38800.1
intron # 5
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38800.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 3'ss of exon 5
gtatcctctttcatgtgataatatctgtataaaacagttatgggaataacaaaatctttagatttttttgttctccccttaacattgttatagGTATTCTGAATTGATTAGTCATGCTCCAGAAGGGGAATATTCAAAGATGGCTCCGTTTCGCATTTTGAGTTTTGACATCGAGTGTGCTGGTCGTAAAGGT
||||||| ||  |     | | || | |  |||    |||| | | ||  | | |  ||     ||  ||| |   | | |      | | || ||||| || ||| | || |||||| | ||||| ||| |||| ||||||||||| |||||||| || |||||||| || || ||||| ||||| ||||||
gtatccttttatactaagtga-atatcttcaaatttattattgaactatgatattactt-----ttcatgtgcattcttaagtcaaataacagATATTCGGATTTGGTAAGCCATGCTGCTGAAGGAGAACATTCTAAGATGGCTCCATTTCGCATATTAAGTTTTGATATTGAATGTGCCGGTCGCAAAGGT

upper sequence: GLYMA04G38800.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S14_182V6.1 (Physcomitrella patens), 3'ss of exon 5
------gtatcctctttcatgtgataatatctgtataaaacagttatgggaataacaaaat-ctttagatttttttgttctccccttaacattgttatagGTATTCTGAATTGATTAGTCATGCTCCAGAAGGGGAATATTCAAAGATGGCTCCGTTTCGCATTTTGAGTTTTGACATCGAGTGTGCTGGTCGTAAAGGT
       ||  |       ||   |      ||| |  |    ||   |||    ||   |  |||     ||  |  | |  | | |     |||  || ||     |  |  | ||  || |  ||| |||  |||||||||||||||| |||||||| ||||| || ||||| ||||||||||| ||  | ||||| 
tgagatttaagcagaagggtggattgggtcatgtgttgattttttggaggatgcccactctgttttccgcattggtaatttttcttgacttcggttgcagCTACAGCAAGATTGTCAGCTATCCAGCAGTAGGCCAATATTCAAAGATGGCCCCGTTTCGAATTTTAAGCTTTGATATCGAGTGTGCAGGGAGAAAAGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgggaataacaaaatctttagatttttttgttctccccttaacattgttatagGTATTCTGAATTGATTAGTCATGCTCCAGAAGGGGAATATTCAAAGATGGCTCCGTTTCGCATTTTGAGTTTTGACATCGAGTGTGCTGGTCGTAAAGGT
 ccccttaac  putative branch site 
      aataacaaaatcttta  TA-rich tract