Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatttttgtctgctttcacttgtcttttttccctcataaagctaaaatgttcttggtctcactagacataacttacagCAGGAGTGTCATCTGGATTTATTGCATCTGGTAGCAGCTTGGAAAATGGATATAATCAGGGATTTCATTCTGCGACACAGCTACCTGCTTTTATTGATAA

Basic information

species Glycine max
transcript GLYMA04G37810.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193481018|gb|FK443869.1|FK443869
EST:     ACCTGATGTTGGTCATAGTCTGAGTGACAACATATCCTTAAGACATAAAG                         CAGGAGTGTCATCTGGATTTATTGCATCTGGTAGCGGCTTGGAAAATGGAT
genomic: ACCTGATGTTGGTCATAGTCTGAGTGACAACATATCCTTAAGACATAAAGgtataatttt ... taacttacagCAGGAGTGTCATCTGGATTTATTGCATCTGGTAGCAGCTTGGAAAATGGAT
EST: gi|5508930|gb|AI855488.1|AI855488
EST:     ACCTGATGTTGGTCATAGTCTGAGTGACAACATATCCTTAAGACATAAAG                         CAGGAGTGTCATCTGGATTTATTGCATCTGGTAGCAGCTTGGAAAATGGAT
genomic: ACCTGATGTTGGTCATAGTCTGAGTGACAACATATCCTTAAGACATAAAGgtataatttt ... taacttacagCAGGAGTGTCATCTGGATTTATTGCATCTGGTAGCAGCTTGGAAAATGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttccctcataaagctaaaatgttcttggtctcactagacataacttacagCAGGAGTGTCATCTGGATTTATTGCATCTGGTAGCAGCTTGGAAAATGGATATAATCAGGGATTTCATTCTGCGACACAGCTACCTGCTTTTATTGATAA
                                          acataac  putative branch site (score: 3)
                   taaaatgtt  TA-rich tract