1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ataattatgaaatttaatatccattgctaatgagtcaaatatgaccatagtatatatgataattttctaacgcttgcagtttcttttatttttgctacagGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACTTGGCTCTTGAAAGGTTGCTGT
species | Glycine max |
transcript | GLYMA04G37620.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAG GTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTEST: gi|192329042|gb|FK019713.1|FK019713
genomic: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGgtgctaagct ... tttgctacagGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATT
EST: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAG GTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTEST: gi|31466422|gb|CD408450.1|CD408450
genomic: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGgtgctaagct ... tttgctacagGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATT
EST: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAG GTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTEST: gi|214006685|gb|DB987567.1|DB987567
genomic: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGgtgctaagct ... tttgctacagGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATT
EST: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAG GTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTEST: gi|9440039|gb|BE440550.1|BE440550
genomic: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGgtgctaagct ... tttgctacagGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATT
EST: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAG GTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAAGAGCATTEST: gi|9205392|gb|BE331616.1|BE331616
genomic: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGgtgctaagct ... tttgctacagGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATT
EST: ACTGGACAGACAGTTNTGCCAATGAATCGTCTCGCGGGATTGAAGACAAT GTACAGAAACTCGTTGAGATGGGATTTEST: gi|209715403|gb|BW682121.1|BW682121
genomic: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGgtgctaagct ... tttgctacagGTACAGAAACTCGTTGAGATGGGATTT
EST: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAG GTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTEST: gi|15204167|gb|BI426935.1|BI426935
genomic: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGgtgctaagct ... tttgctacagGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATT
EST: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAG GTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTEST: gi|23727022|gb|BU761524.1|BU761524
genomic: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGgtgctaagct ... tttgctacagGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATT
EST: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAG GTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCCAGTAAGGAGCATTEST: gi|31467834|gb|CD409862.1|CD409862
genomic: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGgtgctaagct ... tttgctacagGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATT
EST: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAG GTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCCTTEST: gi|298172946|gb|HO019930.1|HO019930
genomic: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGgtgctaagct ... tttgctacagGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATT
EST: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAG GTACAGAAACTCGTTGAGATGGEST: gi|10710312|gb|BF010036.1|BF010036
genomic: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGgtgctaagct ... tttgctacagGTACAGAAACTCGTTGAGATGG
EST: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAG GTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTEST: gi|26268069|gb|CA819132.1|CA819132
genomic: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGgtgctaagct ... tttgctacagGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATT
EST: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAG GTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTEST: gi|10232663|gb|BE801551.1|BE801551
genomic: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGgtgctaagct ... tttgctacagGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATT
EST: ACTGGACAGAGAGTGGTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAG GTACAGAAACTCCTTGAGATGEST: gi|151410843|gb|EV280658.1|EV280658
genomic: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGgtgctaagct ... tttgctacagGTACAGAAACTCGTTGAGATG
EST: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAG GTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATT
genomic: ACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGgtgctaagct ... tttgctacagGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATT
catagtatatatgataattttctaacgcttgcagtttcttttatttttgctacagGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACTTGGCTCTTGAAAGGTTGCTGT
ttctaac putative branch site (score: 1)
tttcttttatttttgc putative PPT
tatatatgataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataattatgaaatttaatatccattgctaatgagtcaaatatgaccatagtatatatgataattttctaacgcttgcagtttcttttatttttgctacagGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACTTGGCTCTTGAAAGGTTGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - ccattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgca