Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttctttcttgtcactagttatctttgaactttatcctaccccctcctccattataccactttgtgatggcattgattttctgctgattcccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTT

Basic information

species Glycine max
transcript GLYMA04G37120.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37120.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g29260.1 (Oryza sativa), 3'ss of exon 5
gtgagtttctttcttgtcactagttatctttgaactttatcctaccccctcctccat-tataccactttgtgatggcattgattttctgctgattccct-tttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTT
       | | |  | | |      |  ||| |  || |  | |  |  |     || || |  |  |||  |    ||  |||     || || |  | ||| ||||||||||||||| |||||| | |||||||| ||||||||||| ||||| ||||||   |||||||| ||| | |||||   |||  ||||||| ||  |
-----catttatgctattagccccaaaatttaatattgaggcaatgctatatgatatataaaaaatattgccaaaa-atctattactaacttatcctttattttagCTGGGAAATCATCGGTTCTGCTAGATGTAAAGCCATGGGATGACGAAACAGACATGGCAAAGCTTGAGGAAGCTGTGAGGAATGTGAAGATGGAGGGCCT

upper sequence: GLYMA04G37120.2 (Glycine max), 3'ss of exon 5
lower sequence: AT2G18110.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagtttctttcttgtcactagttatctttgaactttatcctaccccctcctccattataccactttgtgatgg-cattgattttctgctgattcccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTT
               || | |   | | ||||   ||   |||      | |   || ||      |||   |   |||    |||||  |  || | |  ||||| || || ||||| ||| || ||||| | || || ||||||||||| || |||||||||||||| || ||| | || |||||  ||||||||||||| ||
---------------gtaagtttgtgtttttgcctttacacctgtagtttacgatataatgatgtcttggatttctcatctggtttct-ttcttttcttaatcagCCGGAAAGTCATCAGTTTTGATGGATATCAAGCCGTGGGATGATGAGACGGACATGAAGAAGCTAGAGGAAGCTGTAAGATCCATTCAGATGGAAGGATT

upper sequence: GLYMA04G37120.2 (Glycine max), 3'ss of exon 5
lower sequence: AT1G30230.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgagtttctttcttgtcactagttatctttgaactttatcctaccccc-tcctccat-tataccactttgtgatggcattgattttctgctgattc-------ccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTT
                        ||  ||||   ||| | ||||||   |  |  || |  |  |  |   |||| | | |||||     || ||        | |  | |||||| || || || ||| || | ||| | ||||| ||||||||||| |||||||||||||||||||| ||| | ||||  ||  ||||||||||||| ||
-----------------------gtaagtttgggttttgttctacccttgtaatttatatgaatgatatgaagatgtcttggatttctcattgtttttattattcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTGACATGAAGAAGCTTGAGGAAGCTGTGAAGTCCATTCAGATGGAAGGTTT

upper sequence: GLYMA04G37120.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv17s0000g01540.t01 (Vitis vinifera), 3'ss of exon 5
gtgagtttctttcttgtcactagttatctttgaactttatcctaccccctcctccattataccactttgtgatggcattgattttctgc-tgattcccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTT
     ||  |    |||  ||   ||| |||    || |   |    ||||  | | | | ||  |||   ||    |  ||||| |   ||  |   || |||||||| || || || ||| |||||||||| ||||||||||||||||| ||||||||||| |||||||| ||| ||||  |     || | |||||||||||
----attattgagatgtacctgcctatatttct-tttaaatatgggtcctctcctactttccctttttagcataatctgaattttatttgtgtgtttattctcagCTGGCAAGTCTTCAGTTTTGTTGGATGTGAAACCATGGGATGATGAGACTGACATGAAAAAGCTTGAGGAAGCAGTACGTAGCATTAAAATGGAAGGGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309529|gb|FK000191.1|FK000191
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|58017474|gb|CX704216.1|CX704216
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|151401263|gb|EV271077.1|EV271077
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAGGGCATCTGCGAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|9258998|gb|BE347145.1|BE347145
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|17963409|gb|BM270158.1|BM270158
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|18692713|gb|BM521561.1|BM521561
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|31307073|gb|CD392276.1|CD392276
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|31462978|gb|CD405006.1|CD405006
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCCAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|8401588|gb|BE057152.1|BE057152
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|192329979|gb|FK021565.1|FK021565
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|22523638|gb|BU082449.1|BU082449
EST:     CGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: CGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|151396767|gb|EV266640.1|EV266640
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|58015143|gb|CX701885.1|CX701885
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|19347879|gb|BM892503.1|BM892503
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|31561132|gb|CD486970.1|CD486970
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|298187616|gb|HO034765.1|HO034765
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAA
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAA
EST: gi|192329978|gb|FK021564.1|FK021564
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|254318263|gb|GR832431.1|GR832431
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|208062160|gb|GD858880.1|GD858880
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|15813356|gb|BI785631.1|BI785631
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|254314708|gb|GR829701.1|GR829701
EST:     AGCTGAGGAACGGGCAGCGGCAGTGAAGGCATCTGCAAAAAAGAGAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|4436972|gb|AI522837.1|AI522837
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|192300142|gb|FG989264.1|FG989264
EST:     AGCTGAGGAACGGGCAGCTGTAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|254314709|gb|GR829702.1|GR829702
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|193635492|gb|FK584831.1|FK584831
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|6964003|gb|AW432696.1|AW432696
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|298169520|gb|HO020880.1|HO020880
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGA
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGA
EST: gi|19348668|gb|BM893200.1|BM893200
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|6848971|gb|AW351261.1|AW351261
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|192295190|gb|FG986909.1|FG986909
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|26058029|gb|CA800943.1|CA800943
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|42722502|gb|CK768401.1|CK768401
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|207817388|gb|GD789349.1|GD789349
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCNTGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|15287608|gb|BI471499.1|BI471499
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|7685411|gb|AW756059.1|AW756059
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAGAAAAGAGAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAA
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAA
EST: gi|4286063|gb|AI440993.1|AI440993
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|254318262|gb|GR832430.1|GR832430
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|151396946|gb|EV266819.1|EV266819
EST:     AGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|298165799|gb|HO008770.1|HO008770
EST:     GCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCNNNNNNNGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGA
genomic: GCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAA-GAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGA
EST: gi|9564337|gb|BE473846.1|BE473846
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTTTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|151409150|gb|EV278958.1|EV278958
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|18038851|gb|BM307145.1|BM307145
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|11690340|gb|BF598016.1|BF598016
EST:     AGCTGAGCAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|298186801|gb|HO037434.1|HO037434
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGG
EST: gi|31463360|gb|CD405388.1|CD405388
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|151402916|gb|EV272729.1|EV272729
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|11687926|gb|BF595602.1|BF595602
EST:     AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: AGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
EST: gi|7692495|gb|AW760600.1|AW760600
EST:     GAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGT                         CTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG
genomic: GAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAGTgtgagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctccattataccactttgtgatggcattgattttctgctgattcccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTT
                                     tgctgat  putative branch site (score: 3)
                                ttttctgctgattccc  CT-rich tract
                           attgatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtgagtttctttcttgtcactagttatctttgaactttatcctaccccctcctccattataccactttgtgatggcattgattttctgctgattcccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTAAAACCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG