1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...actatgctcaaattgaattatgcaatctttctttctaaatgattgaattcacaatatggcatgatctaagcagctaactgaattatgctcttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
species | Glycine max |
transcript | GLYMA04G36600.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATCAAGATATTTGCATTAGACGTGGTTCCCCGTAAAAAGCCTGATCCT GCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAGEST: gi|120495078|gb|EH223245.1|EH223245
genomic: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCTgtaagaattt ... ttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
EST: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCT GCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAGEST: gi|8670194|gb|BE191301.1|BE191301
genomic: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCTgtaagaattt ... ttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
EST: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCT GCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAGEST: gi|20811539|gb|BQ296017.1|BQ296017
genomic: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCTgtaagaattt ... ttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
EST: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCT GCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAGEST: gi|9258673|gb|BE346820.1|BE346820
genomic: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCTgtaagaattt ... ttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
EST: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCT GCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAGEST: gi|209718041|gb|BW671874.1|BW671874
genomic: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCTgtaagaattt ... ttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
EST: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCT GCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAGEST: gi|19269931|gb|BM886187.1|BM886187
genomic: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCTgtaagaattt ... ttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
EST: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCT GCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAGEST: gi|31311871|gb|CD397074.1|CD397074
genomic: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCTgtaagaattt ... ttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
EST: AGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCT GCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAGEST: gi|31310757|gb|CD395960.1|CD395960
genomic: AGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCTgtaagaattt ... ttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
EST: AGCCTGATCCT GCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAGEST: gi|8669990|gb|BE191097.1|BE191097
genomic: AGCCTGATCCTgtaagaattt ... ttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
EST: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCT GCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAGEST: gi|192318370|gb|FK011026.1|FK011026
genomic: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCTgtaagaattt ... ttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
EST: NNNTCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCT GCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAGEST: gi|6718650|gb|AW306297.1|AW306297
genomic: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCTgtaagaattt ... ttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
EST: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCT GCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAGEST: gi|31307094|gb|CD392297.1|CD392297
genomic: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCTgtaagaattt ... ttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
EST: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCT GCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAGEST: gi|9564563|gb|BE474072.1|BE474072
genomic: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCTgtaagaattt ... ttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
EST: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCT GCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAGEST: gi|11411417|gb|BF423428.1|BF423428
genomic: AAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCTgtaagaattt ... ttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
EST: GTGGGTCCCCGTATAAAGCCTGATCCT GCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
genomic: GTGGTTCCCCGTAAAAAGCCTGATCCTgtaagaattt ... ttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
aattcacaatatggcatgatctaagcagctaactgaattatgctcttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
agctaac putative branch site (score: 2)
tgctcttcct putative PPT
tgaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actatgctcaaattgaattatgcaatctttctttctaaatgattgaattcacaatatggcatgatctaagcagctaactgaattatgctcttcctgacagGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAG
- tatgctc
- - - - - - - - - - tgcaatc
- - - - - - - - - - - - - - - - - - - - - - - attcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctaact