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...ttaaattgagctacatcacttattttgtagtaaaaaatgccattcatgatcagattgaagtataacattctcttacgaaaaagattttgtattactgtagTGTGAAAGCAACGCTCGCTTTGTGAGATGGTCTGATGGCAGCCTGCAGCTATTAATTGGGAATGAAGTTCTTGACATATCAGTACAAGATGCACAGCATG
species | Glycine max |
transcript | GLYMA04G32540.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACAATATTGTACGCTGGAGGACTACTAGAAATCCTGATGGTACAACATCT TGTGAAAGCAACGCTCGCTTTGTGAGATGGTCTGATEST: gi|193617255|gb|FK567473.1|FK567473
genomic: ACAATATTGTACGCTGGAGGACTACTAGAAATCCTGATGGCACAACATCTgtaagtaaca ... attactgtagTGTGAAAGCAACGCTCGCTTTGTGAGATGGTCTGAT
EST: ACAATATTGTACGCTGGAGGACTACTAGAAATCCTGATGGCACAACATCT TGTGAAAGCAACGCTCGCCTTGTGAGATGGTCTGATGGCAGCCTGCAGCTAEST: gi|41146012|gb|CK606223.1|CK606223
genomic: ACAATATTGTACGCTGGAGGACTACTAGAAATCCTGATGGCACAACATCTgtaagtaaca ... attactgtagTGTGAAAGCAACGCTCGCTTTGTGAGATGGTCTGATGGCAGCCTGCAGCTA
EST: GTACGCTGGAGGACTACTAAAAATCCTGATGGCACAACATCA TGTGAAAGCAATGCTCGCTTTGTGAGATGGTCTGATGGCAGCCTGCAGCTAEST: gi|208252743|gb|GE052971.1|GE052971
genomic: GTACGCTGGAGGACTACTAGAAATCCTGATGGCACAACATCTgtaagtaaca ... attactgtagTGTGAAAGCAACGCTCGCTTTGTGAGATGGTCTGATGGCAGCCTGCAGCTA
EST: ACTAGAAATCCTGATGGCACAACATCT TGTGAAAGCAACGCTCGCTTTGTGAGATGGTCTGATGGCAGCCTGCAGCTA
genomic: ACTAGAAATCCTGATGGCACAACATCTgtaagtaaca ... attactgtagTGTGAAAGCAACGCTCGCTTTGTGAGATGGTCTGATGGCAGCCTGCAGCTA
atgatcagattgaagtataacattctcttacgaaaaagattttgtattactgtagTGTGAAAGCAACGCTCGCTTTGTGAGATGGTCTGATGGCAGCCTGCAGCTATTAATTGGGAATGAAGTTCTTGACATATCAGTACAAGATGCACAGCATG
ctcttac putative branch site (score: 3)
aaaaagattttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaattgagctacatcacttattttgtagtaaaaaatgccattcatgatcagattgaagtataacattctcttacgaaaaagattttgtattactgtagTGTGAAAGCAACGCTCGCTTTGTGAGATGGTCTGATGGCAGCCTGCAGCTATTAATTGGGAATGAAGTTCTTGACATATCAGTACAAGATGCACAGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - agctaca
- - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - -ccattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaga