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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcaatggtaacatgcattgttgattgtttaatacccagGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCGTATCTCGTCCAGAGGTTGAAAGCTTTGCGAGGAACCAAATCAGGGACAAACT

Basic information

species Glycine max
transcript GLYMA04G28970.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G28970.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G379804_T01 (Zea mays), 3'ss of exon 2
---------------------------------------gtttgcaatggtaacatgcattgtt---gattgtttaataccc--agGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCGTATCTCGTCCAGAGGTTGAAAGCTTTGCGAGGAAC-CAAATCAGGGACAAACT
                                       || ||| || | || ||  ||| |     ||| |  |||  ||  ||||| |||||||||| ||||||||||| |||||||| || |||||  | ||  |  |  ||| | | | |  | |||||| | | || || |   |      
gtacgtgcttgtgctatcttgtccatttttatcccctttgtgtgctattgaaa-ataaattttctgaaattttgcaatttccttagGATGATTGGGATCCCGATTGGCAATCAACATCTAGCAGCAAAGTTGCTTACATGATTGAGAAGCTAAGAAGTCTGCGAGAAGCACACATGAATCATGGGA-

upper sequence: GLYMA04G28970.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0067g03330.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------------------------------------gtttgcaatggtaacatgcattgttgattgtttaatacccagGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCGTATCTCGTCCAGAGGTTGAAAGCTTTGCGAGGAACCAAATCAGGGACAAACT
                                                                  | | | ||| |   ||  ||||| | || | ||     ||||||| ||||||||||||||||||||| |||||||| || |||||  | ||| | ||  ||||  | ||||||||||  |   | ||   |  ||    ||
gtaaactaagtactataaatatgttgaatcatatctattttcttcaaattttcactcctcaaacaatgttctatgatttgatatattgtggtttttata-----cagGATACTTGGGATCCTGATTGGCAATCAACATCTAGCAGCAAAGTGACTTATATTGTAAAGAGACTAAAAGCTTTGCAGGAGGCTAATAGAAAGAGTGGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgcaatggtaacatgcattgttgattgtttaatacccagGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCGTATCTCGTCCAGAGGTTGAAAGCTTTGCGAGGAACCAAATCAGGGACAAACT
                                                             ttgattgtttaata  TA-rich tract